Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= NC_028663.1 Length=188632 Score E Sequences producing significant alignments: (Bits) Value seq371 122 1e-22 seq518 100 3e-16 >seq371 Length=681730 Score = 122 bits (134), Expect = 1e-22 Identities = 191/271 (70%), Gaps = 3/271 (1%) Strand=Plus/Plus Query 19295 ACCTGTAACAGTACAGTATCCTTACGAGAAACTCATACCGTCAGAGAGATACCGTGGTCG 19354 |||| |||| | |||||| |||| || || | || | |||||| | | ||||| | Sbjct 471273 ACCTATAACTATTCAGTATTCTTATGAAAATCG-ATCACATCAGAGCATTTCTGTGGTTG 471331 Query 19355 TATACACTATGAGTTTGACAAGTGTATCGCCTGTGAGGTGTGTGTAAGAGTATGCCCTAT 19414 || |||| ||| ||||| || ||||| || ||||| || ||||| | |||||||| || Sbjct 471332 AATCCACTTTGAATTTGATAAATGTATTGCTTGTGAAGTATGTGTTCGTGTATGCCCGAT 471391 Query 19415 CAATCTACCAGTGGTGGATTGGGTGATGAACAAACAGACAAAGAAGAAAGAACTTAGAAA 19474 ||||||| | || ||||| | | || ||| | || ||| || | || Sbjct 471392 AGATCTACCCATTGTAGATTGAAAATTTGA--AAGAGATATTAAAAAAATAATTGCTTAA 471449 Query 19475 TTATTCGATAGACTTTGGAGCATGTATTTTCTGCGGTAACTGCGTAGAGTATTGCCCAAC 19534 |||| || || ||||| | | ||| ||||| ||||| || || |||||||| ||||| Sbjct 471450 TTATAGTATTGATTTTGGGGTCTATATATTCTGTGGTAATTGTGTCGAGTATTGTCCAAC 471509 Query 19535 AAACTGTCTATCCATGACAGAAGAATATGAA 19565 ||||| | ||| ||||| |||||||||||| Sbjct 471510 AAACTATTTATTAATGACTGAAGAATATGAA 471540 >seq518 Length=568097 Score = 100 bits (110), Expect = 3e-16 Identities = 218/323 (67%), Gaps = 4/323 (1%) Strand=Plus/Minus Query 176770 GGTTACAAATTCGGACAAGAAGAAGAGACATACAACATTGTAGCTGCACACGGTTACTTT 176829 ||||| | |||| | |||| || || || | || ||||||| ||| || ||||| ||| Sbjct 409487 GGTTATAGATTCAGTCAAGTGGACGAAACTCATAATATTGTAGGTGCCCATGGTTA-TTT 409429 Query 176830 GGTCGTCTTATCTTCCAGTATGCTTCTTTCAATAACTCAAGAAGTCTTCAC--TTCTTCC 176887 || | || |||| || |||||| |||||| || || | ||| || || || Sbjct 409428 GGCAGATTTGTCTTACAATATGCTAGTTTCAACAATTCTTGTTC-CTTAACATTTATTTT 409370 Query 176888 TTGCAGCATTCCCAGTTGTTTGCATCTGGTTTACTGCAATGGGTGTTTGCACAATGGCAT 176947 | || || | | | || | |||| ||| ||||| | || | | || ||| | | Sbjct 409369 TGGCTGCTTGGCTTGCAGTAGGTATCTAGTTAACTGCTTTACGTATCAGTACTATGACTT 409310 Query 176948 TCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCTTAGACAACTCTGGTAAAGTGATTC 177007 ||||||| || |||||||| | |||||| || ||||||| ||| | || ||| Sbjct 409309 TCAACCTAAATGGTTTCAATTCCAACCAAACTAATGTAGACAATCAGGGTTATGTTATTA 409250 Query 177008 CTACATGGGGAGATATCCTTAACCGTGCAAACCTTGGTATGGAAGTTATGCACGAGCGTA 177067 | | | | |||||| | || | || || ||| ||||||||| ||| | || ||| Sbjct 409249 CCATCTAGACTGATATCATCAATCATGGTAAGTTTGATATGGAAGTAATGTATGAATGTA 409190 Query 177068 ATGCTCACAACTTCCCACTTGAC 177090 |||||||||||||||| || ||| Sbjct 409189 ATGCTCACAACTTCCCTCTAGAC 409167 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603292561297920