Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq232 91.5 1e-13 seq36 87.8 1e-12 >seq232 Length=898664 Score = 91.5 bits (100), Expect = 1e-13 Identities = 94/121 (78%), Gaps = 4/121 (3%) Strand=Plus/Plus Query 118546 TGAGCAATCATGTATGTCAACAAACTGTAGCTG--GCTACATTAAAAGGAACACCCAGAC 118603 |||||||||||| ||||||| || || | | || | ||||| || ||||| |||| Sbjct 726484 TGAGCAATCATGCATGTCAA--AAGTGAATACGACGCAATGTTAAATGGCACACCAAGAC 726541 Query 118604 CCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCAACATAAAACT 118663 |||||||||| || | ||||||| |||||| || ||||| || ||| | |||||||||| Sbjct 726542 CCATGTCTGCAGACCGTTGGTACATTTGGCATGATAGCTCGCCATTTTCCACATAAAACT 726601 Query 118664 G 118664 | Sbjct 726602 G 726602 >seq36 Length=1992845 Score = 87.8 bits (96), Expect = 1e-12 Identities = 93/121 (77%), Gaps = 4/121 (3%) Strand=Plus/Minus Query 118546 TGAGCAATCATGTATGTCAACAAACTGTAGCTG--GCTACATTAAAAGGAACACCCAGAC 118603 |||||||||||| ||||||| || || | | || | ||||| || ||||| |||| Sbjct 1116130 TGAGCAATCATGCATGTCAA--AAGTGAATACGATGCAATGTTAAATGGCACACCAAGAC 1116073 Query 118604 CCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCAACATAAAACT 118663 |||||||||| || | ||||||| |||||| || ||||| || || | |||||||||| Sbjct 1116072 CCATGTCTGCAGACCGTTGGTACATTTGGCATGATAGCTCGCCATTCTCCACATAAAACT 1116013 Query 118664 G 118664 | Sbjct 1116012 G 1116012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414341643778384