Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq167 113 4e-20 seq1259 100 2e-16 seq4 93.3 4e-14 seq281 91.5 1e-13 seq630 82.4 7e-11 >seq167 Length=1102902 Score = 113 bits (124), Expect = 4e-20 Identities = 150/206 (73%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || || ||| ||| ||||| || ||||||||||| || || || |||| || ||||| Sbjct 191602 TGGAGGGTGGACTCCTTTTGAATGTTATAATCGGCGAGGGTGCGGCCGTCTTCCAGCTGC 191661 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 ||||| || || || |||||||||||||| | ||| | || |||||| ||| ||| || Sbjct 191662 TTGCCGGCGAAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCTTTATCCTGGATCTTG 191721 Query 39202 TGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260 |||| ||| | | | ||| || |||||| || |||| ||||| | || || || Sbjct 191722 GCCTTGA-CGTTGTCGATCGTGTCCGACGACTCGACCTCCAAAGTGATGGTCTTGCCGGT 191780 Query 39261 CAGCGTTTTAACAAAGATTTGCATCT 39286 || || || || ||||| ||||||| Sbjct 191781 GAGGGTCTTGACGAAGATCTGCATCT 191806 Score = 82.4 bits (90), Expect = 7e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||| | | ||| | ||||| ||| || || ||||||||| || ||||||||||| Sbjct 191350 CCTCCACGGAGGCGGAGCACCAGATGGAGAGTAGACTCTTTTTGGATGTTATAATCGGCG 191409 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC 39170 || || || |||| ||||| || || || || || || |||||||||||||| Sbjct 191410 AGGGTGCGACCGTCCTCAAGTTGCTTTCCGGCGAAGATCAGACGCTGCTGGTC 191462 >seq1259 Length=190105 Score = 100 bits (110), Expect = 2e-16 Identities = 150/208 (72%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 39081 ATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTG 39140 ||| || ||| ||| || || || ||||| ||||| || || || |||| || ||||| Sbjct 49447 ATGGAGGGTGGACTCCTTCTGGATGTTATAGTCGGCGAGGGTGCGGCCGTCTTCGAGCTG 49388 Query 39141 TTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTT 39200 ||| || || || || || ||||||||||| | ||| | || |||||||||| ||| || Sbjct 49387 TTT-CCGGCGAAGATGAGGCGCTGCTGGTCCG-GGGGATGCCCTCTTTGTCCTGGATCTT 49330 Query 39201 CTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCG 39259 |||| ||| | | | ||| || ||||| || || | ||||| | || |||| Sbjct 49329 GGCCTTGA-CGTTGTCGATCGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCG 49271 Query 39260 TCAGCGTTTTAACAAAGATTTGCATCTT 39287 |||| || || || ||||| |||||||| Sbjct 49270 TCAGAGTCTTCACGAAGATCTGCATCTT 49243 >seq4 Length=3455462 Score = 93.3 bits (102), Expect = 4e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 39098 TTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAA 39157 |||| ||||| || ||||| || || || | || || ||||| ||||| ||||| || | Sbjct 2201537 TTTGAATATTGTAGTCGGCCAGAGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATCA 2201596 Query 39158 GACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG-CC 39216 |||||||||||| | ||| | || ||| |||||| ||| || |||| ||| | | Sbjct 2201597 AACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTTTGCCTTGA-CGTTGTCA 2201655 Query 39217 ACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAG 39276 | ||||| |||||||| || | ||||| | || || || || || || || ||| Sbjct 2201656 ATGGTATCCGAGGACTCCACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAG 2201715 Query 39277 ATTTGCATCTTTA 39289 || ||||||| || Sbjct 2201716 ATCTGCATCTGTA 2201728 >seq281 Length=803475 Score = 91.5 bits (100), Expect = 1e-13 Identities = 145/204 (71%), Gaps = 3/204 (1%) Strand=Plus/Minus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || || ||| ||| || || ||||| ||||||||||| || || |||| ||||||||| Sbjct 255156 TGGAGGGTGGACTCCTTCTGGATATTGTAATCGGCAAGAGTCCGGCCGTCCTCAAGCTGT 255097 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 || || || || || || | ||||||||| | ||| | || ||| |||||| ||| || Sbjct 255096 TTTCCGGCGAAGATTAGCCTCTGCTGGTCCG-GGGGATGCCCTCCTTGTCCTGGATCTTG 255038 Query 39202 TGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260 |||| ||| | | | ||| || ||||| || || | ||||| | || || || Sbjct 255037 GCCTTGA-CGTTGTCGATCGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCGGT 254979 Query 39261 CAGCGTTTTAACAAAGATTTGCAT 39284 || || || || ||||| ||||| Sbjct 254978 GAGGGTCTTGACGAAGATCTGCAT 254955 Score = 89.7 bits (98), Expect = 4e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||| || | ||| | ||||| || || || ||| || || |||||||| ||||| Sbjct 255822 CCTCCCCTAAGGCGGAGCACCAGGTGGAGGGTCGACTCCTTCTGGATATTATAGTCGGCG 255763 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || | |||| ||||||||||| || || || ||||| | ||||||||| | ||| Sbjct 255762 AGGGTCCTGCCGTCTTCAAGCTGTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGGGGGG 255703 Query 39178 ACGCTCTCTTTGTCCATGATTTTC 39201 | || ||| |||||| ||| ||| Sbjct 255702 ATGCCCTCCTTGTCCTGGATCTTC 255679 >seq630 Length=471042 Score = 82.4 bits (90), Expect = 7e-11 Identities = 146/208 (70%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || || ||| ||| || || || || |||||||| || || || |||| || ||||| Sbjct 35897 TGGAGAGTGGACTCCTTCTGGATGTTGTAATCGGCGAGGGTGCGGCCGTCCTCGAGCTGC 35956 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCATGATTTT 39200 || || || || || || ||||||||||| |||||| | || ||| |||||| ||| || Sbjct 35957 TTTCCGGCGAAGATGAGGCGCTGCTGGTCTGGTGGG-ATGCCCTCCTTGTCCTGGATCTT 36015 Query 39201 CTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCG 39259 |||| ||| | | | || ||| ||||| | || | || ||| | || |||| Sbjct 36016 GGACTTGA-CGTTGTCGATGGTGTCGGAGGACTCTGCCTCGAGGGTAATAGTCTTCCCCG 36074 Query 39260 TCAGCGTTTTAACAAAGATTTGCATCTT 39287 | || || || || ||||| ||||| || Sbjct 36075 TGAGGGTCTTCACGAAGATCTGCATGTT 36102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429405530012228