Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq281 116 3e-21 seq297 111 1e-19 seq167 104 2e-17 seq4 104 2e-17 seq782 100 2e-16 seq630 95.1 8e-15 seq155 86.0 4e-12 >seq281 Length=803475 Score = 116 bits (128), Expect = 3e-21 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || |||||||| || || || ||||| ||||| || || ||| || Sbjct 254727 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTCG 254786 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || || |||| | || | | ||||| || || |||| || || || Sbjct 254787 GACACGATCGACAACGTTAAGGCCAAGA-TCCAGGACAAGGAGGGCATACCCCCGGACCA 254845 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || ||| | || || |||||||| || || || |||| || ||| | | ||||||||| Sbjct 254846 GCAACGTCTTATCTTCGCCGGCAAGCAGCTTGAGGACGGCCGGACTCTCGCCGATTACAA 254905 Query 23790 CATACAAAAAGAGTCCAC 23807 || |||||||||||||| Sbjct 254906 TATCCAAAAAGAGTCCAC 254923 >seq297 Length=752846 Score = 111 bits (122), Expect = 1e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||| | || ||||| || || || || ||||| || || ||||| | | Sbjct 217706 ATGCAGATCTTCATCAAGACCCTTACAGGGAAGACTATCACCCTTGAGGTTGAGAGCTCA 217765 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | ||| |||| | || || || || || | || || ||||| Sbjct 217766 GACACCATTGATAATGTGAAAGCAAAGA-TTCAGGATAAGGAGGGCATCCCACCTGATCA 217824 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| | |||||||| || || || || || || | ||||| |||| |||||||| Sbjct 217825 GCAGCGCCTGATATTTGCTGGGAAGCAGCTTGAGGATGGTCGCACATTAGCAGATTACAA 217884 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| |||||||||||||| Sbjct 217885 CATCCAAAAAGAGTCCAC 217902 Score = 93.3 bits (102), Expect = 3e-14 Identities = 144/202 (71%), Gaps = 3/202 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| || || || || || || || || ||||||||| | || || || | | Sbjct 217933 AATGCAGATCTTTGTCAAGACTCTGACAGGGAAGACGATCACTTTGGAGGTGGAGAGCTC 217992 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| |||| ||| | || |||| | || ||||| ||||| | || ||||| | Sbjct 217993 CGACACCATTGATAATGTCAAGGCAAAGA-TTCAGGACAAGGAAGGAAT-CCTCCAGACC 218050 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | |||||| | || ||||| || || ||||| || || | |||||| | | ||||||| Sbjct 218051 AGCAGCGTCTTATCTTTGCTGGAAAGCAACTTGAGGATGGACGCACGCTGGCAGATTACA 218110 Query 23789 ACATACAAAAAGAGTCCACATT 23810 |||| || || || || || || Sbjct 218111 ACATTCAGAAGGAATCTACCTT 218132 >seq167 Length=1102902 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || |||||||| || || || ||||| | || || || | || Sbjct 191576 ATGCAGATATTCGTCAAGACCCTCACCGGCAAGACCATCACCTTGGAGGTCGAGAGCTCG 191517 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || ||| || || |||||| | ||||| || || Sbjct 191516 GACACGATCGACAACGTCAAGGCCAAGATTCAAGATAAGGAAGGTATTCCGCCGGACCAG 191457 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || ||||| || ||||| || |||| ||||| | | |||||| ||| Sbjct 191456 CAGCGTCTGATCTTCGCCGGAAAGCAACTTGAGGACGGTCGCACCCTCGCCGATTATAAC 191397 Query 23791 ATACAAAAAGAGTCCAC 23807 || ||||||||||| || Sbjct 191396 ATCCAAAAAGAGTCTAC 191380 >seq4 Length=3455462 Score = 104 bits (114), Expect = 2e-17 Identities = 142/197 (72%), Gaps = 1/197 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || |||||||| || || || ||||| || || || || ||| || Sbjct 2201723 ATGCAGATCTTCGTCAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTGGAGTCCTCG 2201664 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||| | | || ||| || ||||| || || | || ||||| || Sbjct 2201663 GATACCATTGACAACGTCAAGGCAAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAG 2201604 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||||| || ||||||||||| || || || || | |||||| | | ||| ||||| Sbjct 2201603 CAGCGTTTGATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACTCTGGCCGACTACAAT 2201544 Query 23791 ATACAAAAAGAGTCCAC 23807 || | ||| || ||||| Sbjct 2201543 ATTC-AAAGGAATCCAC 2201528 >seq782 Length=366579 Score = 100 bits (110), Expect = 2e-16 Identities = 96/123 (78%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 23704 GACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAA 23763 ||||| || ||| |||| ||||||||||| | || || || || || ||||| ||||| Sbjct 137962 GACAAGGAGGGTATACCCCCAGATCAACAAAGATTGATTTTCGCTGGAAAACAGTTGGAA 138021 Query 23764 GACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTTTTA 23823 || | || || || | ||||||||||| ||||||||||| ||||| ||| | |||||| Sbjct 138022 GATGGCCGAACCTTGGCTGATTACAACATTCAAAAAGAGTCAACATTGCATCTGGTTTTA 138081 Query 23824 AGG 23826 ||| Sbjct 138082 AGG 138084 >seq630 Length=471042 Score = 95.1 bits (104), Expect = 8e-15 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| ||||| || ||||||||||| || || || || ||||| | || ||| Sbjct 36102 AACATGCAGATCTTCGTGAAGACCCTCACGGGGAAGACTATTACCCTCGAGGCAGAGTCC 36043 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||||| | || | | || || || ||||| || || | || ||||| Sbjct 36042 TCCGACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCACCAGAC 35983 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || ||||| | || || ||||| || || || || |||| ||||| | | ||||||| Sbjct 35982 CAGCAGCGCCTCATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACCCTCGCCGATTAC 35923 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||||| || || |||||||| Sbjct 35922 AACATCCAGAAGGAGTCCAC 35903 >seq155 Length=1009872 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||||||||| || || ||||| || || || || || | Sbjct 940408 ATGCAGATCTTCGTGAAGACCCTCACGGGGAAGACAATCACCCTTGAGGTGGAGTCTTCC 940349 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || ||||| || || | || |||||||| Sbjct 940348 GACACAATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGATCAG 940289 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || || ||||| || || || || || | || || | | ||| |||||| Sbjct 940288 CAGCGCCTCATCTTCGCCGGAAAGCAGCTCGAGGATGGCCGGACCCTCGCCGACTACAAC 940229 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || |||||||| Sbjct 940228 ATTCAGAAGGAGTCCAC 940212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337899378872048