Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq94 111 2e-19 seq2335 105 9e-18 seq28 91.5 2e-13 >seq94 Length=1461416 Score = 111 bits (122), Expect = 2e-19 Identities = 127/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 77897 CTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCC 77956 |||||||||||||| | |||||| |||||| || || |||||| ||| ||||||| Sbjct 1164902 CTCTCTTTCATATTTCATGTATAGCTTTTCAAAATCTTCACCCCAACAGTCAGCCAATCC 1164843 Query 77957 AGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAA 78016 || |||||| ||||| | || |||||| | |||| | | || | | ||| || Sbjct 1164842 TGGAGCTTCATTAGGGCAAAACAGTGACCACTGTCCATTATTTTGGACCCTCTCCATGAA 1164783 Query 78017 GAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTC 78067 ||||||||| ||||| || ||| ||| |||||||| | ||||||||||| Sbjct 1164782 GAGATCAGGAATCCAGAGCGCATAAAAAAGATCTCGTGCCCTATGTTCTTC 1164732 Score = 105 bits (116), Expect = 9e-18 Identities = 156/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 || || ||||| | ||| | || || | |||| | || | || |||||||| ||| || Sbjct 1163986 CCCCCTTGATCAACATAACGAGCAGTATCATTAAACACCCGCAGCATTGGAACAATGCCA 1163927 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 ||||| ||||||||||| ||| ||||||||| || | || || |||||| || || Sbjct 1163926 TTAGAAGTTCCATTTGTCCCACGAATATAACTGCCTGTGGCACGTATATTATGAACTGAA 1163867 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 | || |||||||| || ||| ||| | ||| || ||||| || || || || Sbjct 1163866 ACACCAATTCCTCCAGCAGACTTGCTTATGACAGCACATTCCTTCAAAGTGTCATATATT 1163807 Query 78339 CCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCT 78379 ||||| ||||| ||||| ||||| | ||| || ||||| Sbjct 1163806 CCCTCAATACTATCATCTTTCATGCAGATAAGGAAGCAGCT 1163766 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 78398 AGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATT 78457 ||| ||||| ||||||||||| ||||| ||||| || ||||| || ||| | | || Sbjct 1163656 AGTGCCTGCGTTAAATAATGTTGGAGAAGCATGAGTGAACCAGCGTTGAGACATCAAATG 1163597 Query 78458 GTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAA 78517 |||||| | | | || || || || | || ||||| || || || | ||||| Sbjct 1163596 ATATGTTCTGAGAACAGAATCAATATCATTCTTGTGGATTCCAACAGCAACTCTCATCAG 1163537 Query 78518 CATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAA 78577 ||| || || || ||||| || || | | |||||| | ||| ||| | || | Sbjct 1163536 CATGTGTTGTGGCCTTTCTACTACTTTTCCAGAAACTTTCAAGAGGTAAGATCTCTCAAG 1163477 Query 78578 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAAT 78625 ||| ||||||||||| |||| || |||||| || || ||||| || Sbjct 1163476 AGTCTTAAAACCAAAGTAGTCATAATCAAAGTCCCTATCATAAATTAT 1163429 >seq2335 Length=105124 Score = 105 bits (116), Expect = 9e-18 Identities = 157/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 78158 ACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 78217 ||| || ||||| | ||| | || || | |||| |||| ||||||||||||| || || Sbjct 21879 ACCCCCTTGATCAACATAACGAGCAGTATCATTAAAAACCCTCAACATTGGAACGATGCC 21938 Query 78218 GTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGA 78277 || ||||| |||||||| ||| |||||||| ||| |||| |||||||| | || Sbjct 21939 ATTGGATGTCCCATTTGTCCCACGGATATAACTACCAGTTGCACGAATATTGTGAGCAGA 21998 Query 78278 TATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGAT 78337 ||| || | |||||| || || ||| | ||| || || || ||||| || || Sbjct 21999 TATGCCAACTCCTCCAGCAGATTTGCTTATAACAGCACACTCCTTTAAAGTATCATATAT 22058 Query 78338 ACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTA 78380 ||||| || || ||||| ||||| || | || |||||| Sbjct 22059 GCCCTCAATGCTATCATCTTTCATGCAAACCAAGAAGCAGCTA 22101 >seq28 Length=2151574 Score = 91.5 bits (100), Expect = 2e-13 Identities = 147/209 (70%), Gaps = 3/209 (1%) Strand=Plus/Minus Query 78156 TTACCTCCC--TGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAA 78213 || |||||| ||||| | ||| | || || | |||| | || | || ||| || | || Sbjct 705658 TTCCCTCCCCTTGATCAACATAACGAGCAGTATCATTAAACAC-CGCAGCATCGGCACAA 705600 Query 78214 TACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAA 78273 | || || || ||||||||||| ||| ||||||||| || | || || |||||| || Sbjct 705599 TGCCATTTGAAGTTCCATTTGTCCCACGAATATAACTACCTGTGGCTCGTATATTATGAA 705540 Query 78274 TGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGT 78333 || | || ||||||||||| ||| ||| | ||| || |||| || || | Sbjct 705539 CTGAAACACCAATTCCTCCTGCAGACTTGCTTATGACAGCACATTCCTTCAGAGTGTCAT 705480 Query 78334 AGATACCCTCTATACTGTCATCCATCATG 78362 |||| ||||| ||||| ||||| ||||| Sbjct 705479 AGATTCCCTCAATACTATCATCTTTCATG 705451 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694436468019840