Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq2335 132 7e-26 seq94 120 4e-22 seq28 100 4e-16 >seq2335 Length=105124 Score = 132 bits (146), Expect = 7e-26 Identities = 163/223 (73%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 76753 ACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCC 76812 ||| || ||||| | ||| | ||||| | |||| |||| ||||||||||||| ||||| Sbjct 21879 ACCCCCTTGATCAACATAACGAGCAGTATCATTAAAAACCCTCAACATTGGAACGATGCC 21938 Query 76813 GTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGA 76872 || ||||| |||||||| ||| |||||||| ||| |||||||||||| | ||| Sbjct 21939 ATTGGATGTCCCATTTGTCCCACGGATATAACTACCAGTTGCACGAATATTGTGAGCAGA 21998 Query 76873 TAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGAT 76932 || ||| | |||||| || ||| || | |||||| || || || ||||| || Sbjct 21999 TATGCCAACTCCTCCAGCAGATTTGCTTATAACAGCACACTCCTTTAAAGTATCATATAT 22058 Query 76933 GCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975 |||||| || |||||||| ||||| || | || |||||| Sbjct 22059 GCCCTCAATGCTATCATCTTTCATGCAAACCAAGAAGCAGCTA 22101 Score = 86.0 bits (94), Expect = 9e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 76993 AGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATT 77052 ||| |||| ||||||||| ||||||||||||||||||||||| | ||| | | || Sbjct 22200 AGTCCCTGAATTAAACAAGGTAGGAGATGCATGAGTGAACCACCGCTGAGACATCAAATG 22259 Query 77053 GTATGTTTCAATAACTGCTTCTATATC-CCATTGATGAATTCCTACAGCGACACGCATCA 77111 |||||| || | | || ||||| | ||| || ||||| ||||| || | ||||| Sbjct 22260 ATATGTTCTGATTGCAGAGTCAATATCATCCTTG-TGGATTCCAACAGCAACTCTCATCA 22318 Query 77112 ACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCA 77171 ||| ||||| || | |||||| | || | ||| | | || || | || | Sbjct 22319 GCATGTGCTGCGGCCTTTCTACTGCTTTTCCAGAAGCTTTTAGGAGATAGGACCTCTCGA 22378 Query 77172 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220 ||||||||||||||| |||| || || |||| || ||||| || Sbjct 22379 GAGTTTTAAAACCAAAGTAGTCATAATCGAAATCTCGGTCATAAATTAT 22427 >seq94 Length=1461416 Score = 120 bits (132), Expect = 4e-22 Identities = 159/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 || || ||||| | ||| | ||||| | |||| | || | || |||||||| |||||| Sbjct 1163986 CCCCCTTGATCAACATAACGAGCAGTATCATTAAACACCCGCAGCATTGGAACAATGCCA 1163927 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 ||||| || |||||||| ||| ||||||||| || ||||| |||||| || || Sbjct 1163926 TTAGAAGTTCCATTTGTCCCACGAATATAACTGCCTGTGGCACGTATATTATGAACTGAA 1163867 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || |||||||| || || || | |||||| ||||| |||||||| || Sbjct 1163866 ACACCAATTCCTCCAGCAGACTTGCTTATGACAGCACATTCCTTCAAAGTGTCATATATT 1163807 Query 76934 CCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCT 76974 ||||| ||||||||||| ||||| | ||| || ||||| Sbjct 1163806 CCCTCAATACTATCATCTTTCATGCAGATAAGGAAGCAGCT 1163766 Score = 105 bits (116), Expect = 1e-17 Identities = 126/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 76492 CTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACC 76551 |||||||||||||| | |||| | |||||| || || |||||| ||| |||| || Sbjct 1164902 CTCTCTTTCATATTTCATGTATAGCTTTTCAAAATCTTCACCCCAACAGTCAGCCAATCC 1164843 Query 76552 AGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAA 76611 ||| |||||| || || | || |||||||| |||| | | |||| | ||| || Sbjct 1164842 TGGAGCTTCATTAGGGCAAAACAGTGACCACTGTCCATTATTTTGGACCCTCTCCATGAA 1164783 Query 76612 GAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTC 76662 ||||||||| ||||| || ||| ||| |||||||| | ||| ||||||| Sbjct 1164782 GAGATCAGGAATCCAGAGCGCATAAAAAAGATCTCGTGCCCTATGTTCTTC 1164732 Score = 100 bits (110), Expect = 4e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 76993 AGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATT 77052 ||| ||||| ||||| ||||| ||||| |||||||||||||| || ||| | | || Sbjct 1163656 AGTGCCTGCGTTAAATAATGTTGGAGAAGCATGAGTGAACCAGCGTTGAGACATCAAATG 1163597 Query 77053 GTATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAA 77112 |||||| | ||| | || ||||| | || ||||| ||||| || | ||||| Sbjct 1163596 ATATGTTCTGAGAACAGAATCAATATCATTCTTGTGGATTCCAACAGCAACTCTCATCAG 1163537 Query 77113 CATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAA 77172 ||| || || || | |||||| || | | |||||| | ||| ||| | || | Sbjct 1163536 CATGTGTTGTGGCCTTTCTACTACTTTTCCAGAAACTTTCAAGAGGTAAGATCTCTCAAG 1163477 Query 77173 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220 ||| ||||||||||| |||| || |||||| || || ||||| || Sbjct 1163476 AGTCTTAAAACCAAAGTAGTCATAATCAAAGTCCCTATCATAAATTAT 1163429 >seq28 Length=2151574 Score = 100 bits (110), Expect = 4e-16 Identities = 149/209 (71%), Gaps = 3/209 (1%) Strand=Plus/Minus Query 76751 TTACCTCCC--TGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAA 76808 || |||||| ||||| | ||| | ||||| | |||| | || | || ||| || | || Sbjct 705658 TTCCCTCCCCTTGATCAACATAACGAGCAGTATCATTAAACAC-CGCAGCATCGGCACAA 705600 Query 76809 TGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAA 76868 |||| || || || |||||||| ||| ||||||||| || || || |||||| || Sbjct 705599 TGCCATTTGAAGTTCCATTTGTCCCACGAATATAACTACCTGTGGCTCGTATATTATGAA 705540 Query 76869 TAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCAT 76928 || | || ||||||||||| || || | |||||| |||| ||||||| Sbjct 705539 CTGAAACACCAATTCCTCCTGCAGACTTGCTTATGACAGCACATTCCTTCAGAGTGTCAT 705480 Query 76929 AGATGCCCTCTATACTATCATCCATCATG 76957 |||| ||||| ||||||||||| ||||| Sbjct 705479 AGATTCCCTCAATACTATCATCTTTCATG 705451 Score = 96.9 bits (106), Expect = 5e-15 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 76993 AGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATT 77052 ||| |||||||||| |||||||| || |||||||||||||| || ||| | | || Sbjct 705331 AGTGCCTGCATTAAT-AATGTAGG-GAAGCATGAGTGAACCAGCGTTGAGACATCAAATG 705274 Query 77053 GTATGTTTCAATAACTGCTTCTATATC-CCATTGATGAATTCCTACAGCGACACGCATCA 77111 ||||||| | ||| | || ||||| | ||| || ||||| ||||| || | ||||| Sbjct 705273 GTATGTTCTGAGAACAGAATCAATATCATCCTTG-TGGATTCCAACAGCAACTCTCATCA 705215 Query 77112 ACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCA 77171 |||| || || || | ||||| || | | |||||| | || ||| | || | Sbjct 705214 ACATGTGTTGTGGCCTCTCTACTACTTTTCCAGAAACTTTCAAGAGATAAGATCTCTCAA 705155 Query 77172 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220 ||| |||||||||||||| | || |||||| || || ||||| || Sbjct 705154 GAGTCTTAAAACCAAAATAATCATAATCAAAGTCCCTGTCATAAATTAT 705106 Score = 91.5 bits (100), Expect = 2e-13 Identities = 126/173 (73%), Gaps = 5/173 (3%) Strand=Plus/Minus Query 76492 CTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACC 76551 ||||||| ||||| ||| || | |||||| || || ||||| |||| ||||||| Sbjct 706633 CTCTCTT-CATATCTTGTGTACAGTTTTTCAAAATCTTCACCCCAGCAATCAGCCAAACC 706575 Query 76552 AGGACATTCATTCGGACACATCAATGACCACTCACCAT--CTTCCTTAACCCGTTTCATA 76609 ||| |||||| || || | || |||||||| |||| ||| | |||| | ||| Sbjct 706574 TGGAGCTTCATTAGGGCAAAACAGTGACCACTGTCCATAACTT--TGGACCCTCTCCATG 706517 Query 76610 AAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTC 76662 ||||||||||| ||||| || ||| ||| |||||||| | ||| | ||||| Sbjct 706516 AAGAGATCAGGAATCCAGAGTGCATAAAAAAGATCTCGTGCCCTATGCTCTTC 706464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712695959089920