Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= NC_031235.1 Length=194437 Score E Sequences producing significant alignments: (Bits) Value seq2728 174 2e-38 seq518 152 6e-32 seq85 98.7 1e-15 seq2163 82.4 9e-11 >seq2728 Length=129770 Score = 174 bits (192), Expect = 2e-38 Identities = 233/324 (72%), Gaps = 0/324 (0%) Strand=Plus/Plus Query 186539 TGCTCTGCTGTCAGCAATCCATGGTGTTACTGTAGAAAATACTCTTTATGAAGATGGCGA 186598 ||||||||| | || || ||||||| ||| |||||||||||| | | |||||||| || Sbjct 96486 TGCTCTGCTATGCGCTATTCATGGTGCTACCGTAGAAAATACTTTATTCGAAGATGGTGA 96545 Query 186599 ACAAGCAAACACATTCAAAGCATTCGATACGACGCAAGAAGAAGAAACCTATTCGATGGT 186658 ||||| |||||| || || | | || |||| ||||| || ||||| ||||| Sbjct 96546 CGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCCGAAGAGACTTATTCAATGGT 96605 Query 186659 CACTGCGAACAGATTCTGGTCACAGATCTTCGGAATTGCGTTTAGCAATAAGCGTTGGCT 186718 |||||| ||| | || ||||| || ||||| || |||| ||| |||||| ||||| | Sbjct 96606 CACTGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAATGTTGGTT 96665 Query 186719 TCATTTCTTCATGCTCTTTGTTCCTGTTATGGGTCTTTGGACCTCTTCCATTGGCATTAT 186778 |||||||| ||||| ||||| || || | | | | |||| | | || | | | Sbjct 96666 ACATTTCTTTATGCTATTTGTACCAGTAACCGATTTATGGATGAGTGCTCTTCGGGTAGT 96725 Query 186779 TGGTCTTGCTCTTAACCTTCGTGCTTATGACTTTGTAAGTCAGGAGGTGAGAGCAGCAGA 186838 || || ||||| ||||| |||||||||||||| || || || | | ||||| || Sbjct 96726 CGGCCTGGCTCTGAACCTCCGTGCTTATGACTTCGTTTCCCAAGAAATTCGTGCAGCGGA 96785 Query 186839 GGATCCTGAGTTCGAGACGTTCTA 186862 |||||||| || ||||| ||||| Sbjct 96786 AGATCCTGAATTTGAGACTTTCTA 96809 >seq518 Length=568097 Score = 152 bits (168), Expect = 6e-32 Identities = 314/461 (68%), Gaps = 6/461 (1%) Strand=Plus/Minus Query 183716 ACAACATCCTGATGCACCCCTTCCACATGCTGGGTGTCGCTGGTGTCT-TCGGTGGTTCT 183774 |||||||||| |||| || | |||||| |||||| || ||||| | | | |||| Sbjct 409624 ACAACATCCTCGTGCATCCATCTCACATGTTGGGTGGAGCCGGTGTATATAGCAACTTCT 409565 Query 183775 CTGTTCAGTGCAATGCACGGTTCTCTGGTTACTTCCTCGCTGGTTCGTGAAACCACTGAG 183834 | |||||||| || || ||||| ||| || | | || | ||||||||| | Sbjct 409564 -TATTCAGTGCTATCCATGGTTCCTTGGCAACCTATACTTTGATCAAGGAAACCACTAAA 409506 Query 183835 TCTGAGTCACAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATTGTC 183894 |||||| || | ||||| | ||| |||||| || || || | || ||||| Sbjct 409505 AATGAGTCTACTAATGAAGGTTATAGATTCAGTCAAGTGGACGAAACTCATAATATTGTA 409446 Query 183895 GCTGCTCATGGATACTTTGGTCGTCTGATCTTCCAGTATGCTTCGTTTAACAATTCTCGT 183954 | ||| ||||| || ||||| | | |||| || |||||| || ||||||||| || Sbjct 409445 GGTGCCCATGGTTA-TTTGGCAGATTTGTCTTACAATATGCTAGTTTCAACAATTCTTGT 409387 Query 183955 TCTCTTCAC--TTCTTCCTTGCTGCTTGGCCAGTGGTCGGCATCTGGTTTACTGCTCTTG 184012 || ||| || || || | |||||||||| | || || |||| ||| |||||| | Sbjct 409386 TC-CTTAACATTTATTTTTGGCTGCTTGGCTTGCAGTAGGTATCTAGTTAACTGCTTTAC 409328 Query 184013 GTGTTAGCACTATGGCATTTAACCTGAATGGTTTTAACTTCAACCAGTCCATCATTGATG 184072 || | || |||||| | || ||||| |||||||| || | |||||| | | | || Sbjct 409327 GTATCAGTACTATGACTTTCAACCTAAATGGTTTCAATTCCAACCAAACTAATGTAGACA 409268 Query 184073 GTCAAGGTCGTGTCCTGAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGG 184132 ||| ||| ||| | | || || | | || | |||| | || | ||| |||| Sbjct 409267 ATCAGGGTTATGTTATTACCATCTAGACTGATATCATCAATCATGGTAAGTTTGATATGG 409208 Query 184133 AAGTGATGCACGAGCGTAATGCTCACAACTTCCCTCTCGAC 184173 |||| ||| | || |||||||||||||||||||||| ||| Sbjct 409207 AAGTAATGTATGAATGTAATGCTCACAACTTCCCTCTAGAC 409167 >seq85 Length=1476802 Score = 98.7 bits (108), Expect = 1e-15 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 183703 TTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGCTGGGTGTCGCTGGTGTC 183762 |||||| || ||||||||||| ||||| || || |||||| ||||||| |||||||| Sbjct 645545 TTCCAAATGGAACACAACATCCTTATGCATCCATTTCACATGTTGGGTGTAGCTGGTGTA 645604 Query 183763 TTCGGTGGTTCTCTGTTCAGTGCAATGCACGGTTCTCTGGTTAC 183806 ||||| || || || |||||||| ||||| ||||| |||| || Sbjct 645605 TTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAAC 645648 >seq2163 Length=162151 Score = 82.4 bits (90), Expect = 9e-11 Identities = 134/193 (69%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 185971 TGGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGATTACTTCTTT 186030 ||||||| ||| | | | ||||| || | ||||| ||||||||||| || | || | Sbjct 135437 TGGATGATTGGTTATGAAGGGACCGTTTCATTTTTGTAGGCTGGTCTGGCCTATTACTCT 135378 Query 186031 TTCCCACTGCTTATATGGCAATTGGTGGCTGGCTTACTGGCACAACGTTTGTTACGAGCT 186090 |||| ||||||| | || | || || ||| ||| || | ||| ||||| || | Sbjct 135377 TTCCTTATGCTTATTTCGCTTTAGGAGGTTGGTTTATAGGTATAACTTTTGTAACTTCAT 135318 Query 186091 GGTATACCCACGGGTTGGCGTCTTCTTACCTTGAGGGTGCTAATTTTCTCACGGCAGCAG 186150 |||||||||| || ||||| ||| || | || ||| ||||| | || || | || Sbjct 135317 GGTATACCCATGGATTGGCCAGTTCCTATTTGGAAGGTTGCAATTTCTTGACCGCTGTAG 135258 Query 186151 TGTCAACTCCTGC 186163 | || |||||||| Sbjct 135257 TTTCCACTCCTGC 135245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 621862348554720