Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= NC_031242.1 Length=174307 Score E Sequences producing significant alignments: (Bits) Value seq2728 188 8e-43 seq518 132 5e-26 seq2163 111 2e-19 seq85 82.4 9e-11 >seq2728 Length=129770 Score = 188 bits (208), Expect = 8e-43 Identities = 241/332 (73%), Gaps = 0/332 (0%) Strand=Plus/Plus Query 165723 TTAGGCGGAGCATTGCTTTCTGCCATTCATGGTGTTACAGTAGAGAATACTTTGTATGAA 165782 ||||||| || |||| | || |||||||||| ||| ||||| |||||||| | ||| Sbjct 96478 TTAGGCGCTGCTCTGCTATGCGCTATTCATGGTGCTACCGTAGAAAATACTTTATTCGAA 96537 Query 165783 GATGGTGAACAAGCAAACACTTTCAAAGCATTTGATAGTACTCAGGAAGAGGAAACTTAT 165842 |||||||| ||||| || ||| || ||| | ||||| | || || |||||| Sbjct 96538 GATGGTGACGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCCGAAGAGACTTAT 96597 Query 165843 TCCATGGTCACTGCTAACCGTTTCTGGTCTCAGATTTTTGGTATTGCTTTCAGCAATAAG 165902 || ||||||||||||||||| || ||||| || || ||||| ||||||| |||||| Sbjct 96598 TCAATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAA 96657 Query 165903 CGTTGGCTTCACTTCTTTATGCTCTTTGTTCCTGTCATGGGACTTTGGACAAGTTCTATT 165962 ||||| | || ||||||||||| ||||| || || | | | |||| ||| || || Sbjct 96658 TGTTGGTTACATTTCTTTATGCTATTTGTACCAGTAACCGATTTATGGATGAGTGCTCTT 96717 Query 165963 GGTATCATTGGTCTCGCACTCAATCTTCGTGCTTATGATTTTGTGTCTCAGGAGATTAGA 166022 | | | || || || || || || ||||||||||| || || || || || ||| | Sbjct 96718 CGGGTAGTCGGCCTGGCTCTGAACCTCCGTGCTTATGACTTCGTTTCCCAAGAAATTCGT 96777 Query 166023 GCTGCTGAGGATCCAGAGTTTGAAACGTTCTA 166054 || || || ||||| || ||||| || ||||| Sbjct 96778 GCAGCGGAAGATCCTGAATTTGAGACTTTCTA 96809 >seq518 Length=568097 Score = 132 bits (146), Expect = 5e-26 Identities = 406/622 (65%), Gaps = 32/622 (5%) Strand=Plus/Minus Query 164286 GTCTTGGTATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGCGAGTG 164345 |||| || |||| || ||||||| || ||||| || ||||||| || || || | || Sbjct 409758 GTCTGGGCATGCATCTTTGGATTGTTGTTGCATATTCAACTCCTGTTGCAGCTGCTACTG 409699 Query 164346 CAGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGGCA 164405 | | ||| || ||| ||| | |||||||| |||||||||| |||||| Sbjct 409698 CTAT-TTCTTGACCTACCCTATTGGTCAAGGAAGTTTCTCTGAT---ATGCCTT------ 409649 Query 164406 TCTCTGGAACCTTCAACTACATGTTGGTCTTCCAGGCTGAGCACAACATCCTCATGCACC 164465 |||| |||| || || | | || ||||||||||| |||| | Sbjct 409648 ------GAAC----AACTGTATTTTAA------ATG--GATTACAACATCCTCGTGCATC 409607 Query 164466 CCTTCCATATGCTCGGCGTAGCAGGTGTGTTTGGCGG-TTCTCTGTTCAGTGCAATGCAC 164524 | | || ||| | || | ||| ||||| | | || |||| | |||||||| || || Sbjct 409606 CATCTCACATGTTGGGTGGAGCCGGTGTATATAGCAACTTCT-TATTCAGTGCTATCCAT 409548 Query 164525 GGTTCGCTGGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAAATGAGTCCCAGAACTAT 164584 ||||| ||| || | | | || | || ||||| |||||||||| || | Sbjct 409547 GGTTCCTTGGCAACCTATACTTTGATCAAGGAAACCACTAAAAATGAGTCTACTAATGAA 409488 Query 164585 GGTTACAAGTTTGGTCAGGAAGAAGAAACCTACAACATCGTTGCCGCTCACGGTTACTTT 164644 ||||| | || |||| | || ||||| | || || || | || || ||||| ||| Sbjct 409487 GGTTATAGATTCAGTCAAGTGGACGAAACTCATAATATTGTAGGTGCCCATGGTTA-TTT 409429 Query 164645 GGTCGTCTGATTTTCCAATACGCTTCCTTCAACAACTCCCGTTCGCTG-CACTTCTTCCT 164703 || | | | || ||||| ||| |||||||| || |||| | || || || | Sbjct 409428 GGCAGATTTGTCTTACAATATGCTAGTTTCAACAATTCTTGTTCCTTAACATTTATTTTT 409369 Query 164704 CGCAGCATGGCCTGTTGTCGGTATCTGGTTTACTGCTCTGGGCGTTAGCACCATGGCATT 164763 || || |||| || || ||||||| ||| |||||| | | | || || ||| | || Sbjct 409368 GGCTGCTTGGCTTGCAGTAGGTATCTAGTTAACTGCTTTACGTATCAGTACTATGACTTT 409309 Query 164764 CAACCTCAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAA 164823 |||||| || |||||||| | |||||| | | | || ||||||| ||| | | Sbjct 409308 CAACCTAAATGGTTTCAATTCCAACCAAACTAATGTAGACAATCAGGGTTATGTTATTAC 409249 Query 164824 CACCTGGGCAGACGTTCTCAACCGTGCTGGTCTGGGCATGGAAGTGATGCACGAGCGTAA 164883 || || | | || | |||| | || | | | |||||||| ||| | || |||| Sbjct 409248 CATCTAGACTGATATCATCAATCATGGTAAGTTTGATATGGAAGTAATGTATGAATGTAA 409189 Query 164884 TGCTCACAACTTCCCTCTCGAC 164905 |||||||||||||||||| ||| Sbjct 409188 TGCTCACAACTTCCCTCTAGAC 409167 >seq2163 Length=162151 Score = 111 bits (122), Expect = 2e-19 Identities = 134/179 (75%), Gaps = 4/179 (2%) Strand=Plus/Minus Query 165179 AAGAGACCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCT 165238 ||| ||||||||| ||||||| ||||||||||| || | || ||||| ||||||| | Sbjct 135421 AAGGGACCGTTTCATTTTTGTAGGCTGGTCTGGCCTATTACTCTTTCCTTATGCTTATTT 135362 Query 165239 TGCTCTTGGGGGTTGGCTTACTGGGACTACTTTCGTCACGAGTTGGTATACTCACGGACT 165298 ||| | || |||||| ||| || | ||||| || || |||||||| || ||| | Sbjct 135361 CGCTTTAGGAGGTTGGTTTATAGGTATAACTTTTGTAACTTCATGGTATACCCATGGATT 135302 Query 165299 TGCGAGTTCCTATCTTG-AGGGTGCAAACTTTCTT-ACTGCGGCAGTTTCTACTCCAGC 165355 || ||||||||| | | ||| ||||| |||||| || || | |||||| ||||| || Sbjct 135301 GGCCAGTTCCTATTTGGAAGGTTGCAA--TTTCTTGACCGCTGTAGTTTCCACTCCTGC 135245 >seq85 Length=1476802 Score = 82.4 bits (90), Expect = 9e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 164444 GAGCACAACATCCTCATGCACCCCTTCCATATGCTCGGCGTAGCAGGTGTGTTTGGCGGT 164503 || ||||||||||| ||||| || || || ||| | || ||||| ||||| || ||||| Sbjct 645554 GAACACAACATCCTTATGCATCCATTTCACATGTTGGGTGTAGCTGGTGTATTCGGCGGC 645613 Query 164504 TCTCTGTTCAGTGCAATGCACGGTTCGCTGGTTAC 164538 || || |||||||| ||||| ||||| |||| || Sbjct 645614 TCCCTATTCAGTGCTATGCATGGTTCCTTGGTAAC 645648 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557467892485920