Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= NC_031935.1 Length=186386 Score E Sequences producing significant alignments: (Bits) Value seq2728 174 2e-38 seq518 134 2e-26 seq916 98.7 1e-15 seq85 93.3 5e-14 >seq2728 Length=129770 Score = 174 bits (192), Expect = 2e-38 Identities = 230/319 (72%), Gaps = 0/319 (0%) Strand=Plus/Plus Query 179422 TGCTTTGTGCCATTCATGGTGCTACAGTAGAGAACACACTCTTTGAAGACAGTGACCAAT 179481 |||| || || |||||||||||||| ||||| || || | || ||||| ||||| Sbjct 96491 TGCTATGCGCTATTCATGGTGCTACCGTAGAAAATACTTTATTCGAAGATGGTGACGGTG 96550 Query 179482 CAAATACATTCAAGGCATTCGAGCCTACACAAGAAGAGGAGACCTATTCGATGGTTACTG 179541 ||||||||||| || || | || || |||| || ||||| ||||| ||||| |||| Sbjct 96551 CAAATACATTCCGTGCTTTTAACCCAACTCAAGCCGAAGAGACTTATTCAATGGTCACTG 96610 Query 179542 CCAACCGTTTCTGGTCTCAGATCTTTGGTATCGCCTTCAGCAATAAGCGTTGGCTACATT 179601 | ||||| || ||||| || |||||||| | || || |||||| ||||| |||||| Sbjct 96611 CTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAATGTTGGTTACATT 96670 Query 179602 TCTTTATGTTGTTTGTTCCTGTCATGGGTCTTTGGACCTCTAGCATTGGTATTATTGGTC 179661 |||||||| | ||||| || || | | | | |||| | || | | | || | Sbjct 96671 TCTTTATGCTATTTGTACCAGTAACCGATTTATGGATGAGTGCTCTTCGGGTAGTCGGCC 96730 Query 179662 TTGCACTTAACCTTAGAGCTTATGACTTTGTTTCACAAGAGATCAGAGCGGCAGAGGATC 179721 | || || ||||| | ||||||||||| ||||| ||||| || | || || || |||| Sbjct 96731 TGGCTCTGAACCTCCGTGCTTATGACTTCGTTTCCCAAGAAATTCGTGCAGCGGAAGATC 96790 Query 179722 CTGAGTTCGAGACGTTCTA 179740 |||| || ||||| ||||| Sbjct 96791 CTGAATTTGAGACTTTCTA 96809 >seq518 Length=568097 Score = 134 bits (148), Expect = 2e-26 Identities = 309/460 (67%), Gaps = 4/460 (1%) Strand=Plus/Minus Query 178118 ACAACATCCTGATGCACCCCTTCCACATGTTGGGCGTCGCTGGTGTCTTTGGTGG-TTCT 178176 |||||||||| |||| || | ||||||||||| | || ||||| | | | |||| Sbjct 409624 ACAACATCCTCGTGCATCCATCTCACATGTTGGGTGGAGCCGGTGTATATAGCAACTTCT 409565 Query 178177 CTGTTCAGTGCGATGCACGGTTCTCTGGTTACTTCCTCGCTGGTTCGTGAAACCACCGAG 178236 | |||||||| || || ||||| ||| || | | || | |||||||| | Sbjct 409564 -TATTCAGTGCTATCCATGGTTCCTTGGCAACCTATACTTTGATCAAGGAAACCACTAAA 409506 Query 178237 AACGAAAGTCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTT 178296 || || | || | ||||| | ||| |||||| || || || | || || || Sbjct 409505 AATGAGTCTACTAATGAAGGTTATAGATTCAGTCAAGTGGACGAAACTCATAATATTGTA 409446 Query 178297 GCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCATCCTTCAACAACTCCCGT 178356 | ||| |||||||| || || | | |||| ||||| || |||||||| || || Sbjct 409445 GGTGCCCATGGTTATTT-GGCAGATTTGTCTTACAATATGCTAGTTTCAACAATTCTTGT 409387 Query 178357 TCGCTG-CACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCTCTTGG 178415 || | || || || | || || |||| || || ||||||| ||| |||||| | | Sbjct 409386 TCCTTAACATTTATTTTTGGCTGCTTGGCTTGCAGTAGGTATCTAGTTAACTGCTTTACG 409327 Query 178416 TGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATGGATAG 178475 | | || || ||| | |||||||| || |||||||| | |||||| | | | || | Sbjct 409326 TATCAGTACTATGACTTTCAACCTAAATGGTTTCAATTCCAACCAAACTAATGTAGACAA 409267 Query 178476 TCAGGGCAAAGTCCTGAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGTATGGA 178535 |||||| | || | | || || | | || | |||| | || | ||| |||||| Sbjct 409266 TCAGGGTTATGTTATTACCATCTAGACTGATATCATCAATCATGGTAAGTTTGATATGGA 409207 Query 178536 AGTCATGCACGAGCGTAATGCTCACAACTTCCCTCTTGAC 178575 ||| ||| | || |||||||||||||||||||||| ||| Sbjct 409206 AGTAATGTATGAATGTAATGCTCACAACTTCCCTCTAGAC 409167 >seq916 Length=298367 Score = 98.7 bits (108), Expect = 1e-15 Identities = 216/320 (68%), Gaps = 8/320 (3%) Strand=Plus/Plus Query 179127 TGGCCTTTTGTGGCGCTCCACGGTGCCTTCGCTCTCATAGGTTTCATGCTTCGGCAGTTT 179186 ||| ||||||| || |||||||||| ||| || | |||||| | | || | || Sbjct 270196 TGGGCTTTTGTTGCTCTCCACGGTGTTTTCAGACTAACAGGTTTTACATTACGTTAATTC 270255 Query 179187 GAAATCGCACGTCTAGTCGGTATTC-GTCCTTACAATGCAATCGCGTTTTCTGGTCCAAT 179245 ||| || | | || | ||| | | ||| ||||||||||| || | || |||||| Sbjct 270256 GAACCTGCTTGATTTGT-GCAATTGTGACTTTATAATGCAATCGCATTCTTTGTTCCAAT 270314 Query 179246 TGCTGTCTTTGTGTCTGTTTTTCTCATGTATCCTCTCGGACAGTCCTCGTGGTTCTTTGC 179305 |||| | ||||| ||||| || |||| ||||| || || || || ||||||||||| Sbjct 270315 TGCTAT-TTTGTTTCTGTATTCTTCATTTATCCACTGGGTCAATCTAGTTGGTTCTTTGC 270373 Query 179306 GCCGTCGTTTGGAGTTGCAGCGATTTTCCGCTTCCTACTCTTCCTACAGGGCTTCCACAA 179365 || || |||||||| || || | ||| | |||||| | || || || || || Sbjct 270374 ACCCAGGT-----GTTGCAGCTATATTTTGATTCATCCTCTTCTTCCAAGGGTTTCATAA 270428 Query 179366 CTGGACGCTCAACCCGTTCCACATGATGGGTGTAGCAGGTATCCTGGGCGGAGCATTGCT 179425 |||| | | ||||| || || ||| || || || || | | || || |||| Sbjct 270429 TTGGATGTTGAACCCATTTCATTTGACTGGAGTTGCCGGAGTATTAGGTACTGCTCTGCT 270488 Query 179426 TTGTGCCATTCATGGTGCTA 179445 || | ||||||||||||| Sbjct 270489 ATGCACTATTCATGGTGCTA 270508 >seq85 Length=1476802 Score = 93.3 bits (102), Expect = 5e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 178105 TTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGTTGGGCGTCGCTGGTGTC 178164 |||||| || ||||||||||| ||||| || || ||||||||||| || |||||||| Sbjct 645545 TTCCAAATGGAACACAACATCCTTATGCATCCATTTCACATGTTGGGTGTAGCTGGTGTA 645604 Query 178165 TTTGGTGGTTCTCTGTTCAGTGCGATGCACGGTTCTCTGGTTAC 178208 || || || || || |||||||| ||||| ||||| |||| || Sbjct 645605 TTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAAC 645648 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596107765056960