Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= NC_031944.1 Length=185102 Score E Sequences producing significant alignments: (Bits) Value seq2728 188 8e-43 seq916 107 2e-18 seq518 102 1e-16 >seq2728 Length=129770 Score = 188 bits (208), Expect = 8e-43 Identities = 239/329 (73%), Gaps = 0/329 (0%) Strand=Plus/Plus Query 171168 GGCGGTGCATTGCTTTCTGCAATTCATGGTGTTACAGTAGAGAATACTTTGTATGAAGAT 171227 |||| ||| |||| | || |||||||||| ||| ||||| |||||||| | |||||| Sbjct 96481 GGCGCTGCTCTGCTATGCGCTATTCATGGTGCTACCGTAGAAAATACTTTATTCGAAGAT 96540 Query 171228 GGTGATCAAGCAAACACCTTTAAGGCATTTGACACGACTCAGGAGGAAGAGACATATTCT 171287 ||||| ||||| || || || ||| || | ||||| | |||||||| ||||| Sbjct 96541 GGTGACGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCCGAAGAGACTTATTCA 96600 Query 171288 ATGGTCACTGCTAATCGTTTCTGGTCGCAGATTTTTGGTATCGCGTTCAGCAATAAGCGT 171347 |||||||||||||| || || ||||| || || ||||| | || || |||||| || Sbjct 96601 ATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAATGT 96660 Query 171348 TGGTTGCATTTCTTTATGCTGTTTGTTCCTGTCATGGGTCTTTGGGTCAGTAGTCTGGGG 171407 ||||| |||||||||||||| ||||| || || | | | | ||| | ||| ||| || Sbjct 96661 TGGTTACATTTCTTTATGCTATTTGTACCAGTAACCGATTTATGGATGAGTGCTCTTCGG 96720 Query 171408 ATTATTGGTCTTGCTCTTAATCTTAGGGCTTATGATTTCGTAAGTCAGGAGGTCAGAGCA 171467 | | || || ||||| || || | |||||||| ||||| || || | | ||| Sbjct 96721 GTAGTCGGCCTGGCTCTGAACCTCCGTGCTTATGACTTCGTTTCCCAAGAAATTCGTGCA 96780 Query 171468 GCAGAAGATCCAGAGTTCGAGACGTTCTA 171496 || |||||||| || || ||||| ||||| Sbjct 96781 GCGGAAGATCCTGAATTTGAGACTTTCTA 96809 >seq916 Length=298367 Score = 107 bits (118), Expect = 2e-18 Identities = 162/229 (71%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 170973 TACAATGCAATCGCTTTCTCTGGTCCTATCGCTGTGTTTGTCAGCGTGTTCCTCATCTAT 171032 || ||||||||||| |||| || ||| || ||| | ||||| || ||| |||| ||| Sbjct 270286 TATAATGCAATCGCATTCTTTGTTCCAATTGCTAT-TTTGTTTCTGTATTCTTCATTTAT 270344 Query 171033 CCTCTTGGGCAGTCAAGTTGGTTCTTCGCACCTTCCTTTGGAGTTGCAGCAATCTTCCGC 171092 || || || || || ||||||||||| ||||| || |||||||| || || | Sbjct 270345 CCACTGGGTCAATCTAGTTGGTTCTTTGCACC-----CAGGTGTTGCAGCTATATTTTGA 270399 Query 171093 TTCCTGCTCTTCCTGCAAGGTTTCCACAACTGGACACTGAATCCATTTCATATGATGGGT 171152 ||| | |||||| | ||||| || || || |||| |||| ||||||||| ||| || Sbjct 270400 TTCATCCTCTTCTTCCAAGGGTTTCATAATTGGATGTTGAACCCATTTCATTTGACTGGA 270459 Query 171153 GTTGCAGGTATCCTCGGCGGTGCATTGCTTTCTGCAATTCATGGTGTTA 171201 ||||| || | | || ||| |||| | | |||||||||| || Sbjct 270460 GTTGCCGGAGTATTAGGTACTGCTCTGCTATGCACTATTCATGGTGCTA 270508 >seq518 Length=568097 Score = 102 bits (112), Expect = 1e-16 Identities = 396/621 (64%), Gaps = 30/621 (5%) Strand=Plus/Minus Query 169710 GTCTGGGTATGCGCCCTTGGATCTGTGTTGCTTACTCTGCTCCCGTTGCGGCAGCCTCCG 169769 ||||||| |||| | |||||| |||||| || || |||| ||||| || || | | Sbjct 409758 GTCTGGGCATGCATCTTTGGATTGTTGTTGCATATTCAACTCCTGTTGCAGCTGCTACTG 409699 Query 169770 CTGTTTTCCTGGTCTACCCGTTTGGGCAAGGGTCGTTCTCTGACGCTATGCCTCTGGGTA 169829 || ||| | || |||||| |||| ||||| |||||||| ||||||| Sbjct 409698 CTATTT-CTTGACCTACCCTATTGGTCAAGGAAGTTTCTCTGA---TATGCCTT------ 409649 Query 169830 TCTCGGGAACCTTTAACTACATGCTGGTCTTCCAAGCTGAGCACAACATCCTCATGCACC 169889 |||| |||| || || || || ||||||||||| |||| | Sbjct 409648 ------GAAC----AACT--------GTATTTTAAATGGATTACAACATCCTCGTGCATC 409607 Query 169890 CCTTCCACATGCTTGGTGTTGCGGGAGTGTTTGGTGGGTCTCTGTTTAGCGCGATGCACG 169949 | | |||||| | |||| || || || | | | | | || || || || || | Sbjct 409606 CATCTCACATGTTGGGTGGAGCCGGTGTATATAGCAACTTCTTATTCAGTGCTATCCATG 409547 Query 169950 GTAGCCTCGTCACTTCGAGTCTTGTCCGTGAAACCACCGAGAACGAGTCCCAGAACTATG 170009 || | | | || | | | | || |||||||| | || ||||| || | | Sbjct 409546 GTTCCTTGGCAACCTATACTTTGATCAAGGAAACCACTAAAAATGAGTCTACTAATGAAG 409487 Query 170010 GTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCCGCTCACGGTTACTTCG 170069 |||| | ||| |||||| || || || | || || || | || || ||||| || | Sbjct 409486 GTTATAGATTCAGTCAAGTGGACGAAACTCATAATATTGTAGGTGCCCATGGTTATTT-G 409428 Query 170070 GTCGCCTGATCTTCCAATACGCTTCCTTCAACAACTCCCGTTCACTG-CACTTCTTCCTC 170128 | | | |||| ||||| ||| |||||||| || |||| | || || || | Sbjct 409427 GCAGATTTGTCTTACAATATGCTAGTTTCAACAATTCTTGTTCCTTAACATTTATTTTTG 409368 Query 170129 GCAGCATGGCCTGTTGTTGGCATCTGGTTCACCGCTCTTGGTGTCTCCACGATGGCGTTC 170188 || || |||| || || || |||| ||| || ||| | || || || ||| | ||| Sbjct 409367 GCTGCTTGGCTTGCAGTAGGTATCTAGTTAACTGCTTTACGTATCAGTACTATGACTTTC 409308 Query 170189 AACCTGAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAAC 170248 ||||| || |||||||| | |||||| | | | || ||||||| ||| | | | Sbjct 409307 AACCTAAATGGTTTCAATTCCAACCAAACTAATGTAGACAATCAGGGTTATGTTATTACC 409248 Query 170249 ACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGTAAT 170308 | || | | || | |||| | || | ||| |||||||| ||| | || ||||| Sbjct 409247 ATCTAGACTGATATCATCAATCATGGTAAGTTTGATATGGAAGTAATGTATGAATGTAAT 409188 Query 170309 GCTCACAACTTCCCTCTCGAC 170329 ||||||||||||||||| ||| Sbjct 409187 GCTCACAACTTCCCTCTAGAC 409167 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592000339245120