Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq155 158 1e-33 seq1259 150 2e-31 seq167 149 6e-31 seq630 143 2e-29 seq281 122 8e-23 seq4 114 1e-20 seq297 96.9 3e-15 seq26 87.8 2e-12 >seq155 Length=1009872 Score = 158 bits (174), Expect = 1e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 41634 CGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGG 41693 |||||||||| ||||| | || || || || ||| ||||||||||||||| ||||||| Sbjct 940180 CGCCGCCGCGGAGACGAAGGACGAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGG 940239 Query 41694 AGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGG 41753 |||||| || | || ||||||||||| |||||||| || |||||||| || || | || Sbjct 940240 CGAGGGTCCGGCCATCCTCGAGCTGCTTTCCGGCGAAGATGAGGCGCTGCTGATCTGGGG 940299 Query 41754 GAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCA 41813 | | || |||||||||| ||| || ||| | | | |||||| ||||||| Sbjct 940300 GGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATTGTGTCGGAAGACTCCA 940359 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| | || || || || ||||| || ||||| ||||| ||||||||| Sbjct 940360 CCTCAAGGGTGATTGTCTTCCCCGTGAGGGTCTTCACGAAGATCTGCATG 940409 >seq1259 Length=190105 Score = 150 bits (166), Expect = 2e-31 Identities = 175/231 (76%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| || || | || ||||| || ||| ||||||||| ||||||||||||| | Sbjct 49470 CCACCGCGGAGGCGGAGGACTAGATGGAGGGTGGACTCCTTCTGGATGTTATAGTCGGCG 49411 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| |||| |||||||| || |||||||| || |||||||| ||||||| ||| Sbjct 49410 AGGGTGCGGCCGTCTTCGAGCTG-TTTCCGGCGAAGATGAGGCGCTGCTGGTCCG-GGGG 49353 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || ||| |||||| || | || || | ||| | | | ||||| ||||| || Sbjct 49352 ATGCCCTCTTTGTCC-TGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGAGGACTCGAC 49294 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||| | || || || || |||||||| ||||| ||||| |||||||| || Sbjct 49293 CTCGAGGGTGATGGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCATCTT 49243 >seq167 Length=1102902 Score = 149 bits (164), Expect = 6e-31 Identities = 172/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | || || || || ||| |||||| ||||||||||| |||| Sbjct 191577 GCCTCCACGGAGACGGAGGACAAGGTGGAGGGTGGACTCCTTTTGAATGTTATAATCGGC 191636 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||||||||| |||| || ||||||||||||||||| ||||| ||||| ||||||| ||| Sbjct 191637 GAGGGTGCGGCCGTCTTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGGGG 191696 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | || ||| || ||| || | || || | ||| | | | ||||| |||||| | Sbjct 191697 GATGCCCTCTTTATCC-TGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGACGACTCGA 191755 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||| || || || || || || || ||||| ||||| |||||||| Sbjct 191756 CCTCCAAAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 191804 Score = 123 bits (136), Expect = 2e-23 Identities = 169/231 (73%), Gaps = 9/231 (4%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| ||||| | ||||||||| || ||| |||||||||||| |||||||||| Sbjct 191123 CCACCGCGAAGACGGAGCACCAGATGGAGGGTGGACTCCTTCTGAATATTATAGTCGGCA 191182 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| | |||| || |||||||| ||||| || ||||| | ||| ||||||| ||| Sbjct 191183 AGGGTCCTGCCGTCCTCAAGCTGCTTCCCGGC-AAGATCAGCCTCTGCTGGTCCGGCGGA 191241 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCA-ACGACGACACAGTGTC---GCTCGACTC 41811 | | |||||| ||| ||| || ||| | | | | | || || ||| ||| Sbjct 191242 ATCCCCTCCTTATCCTGGATCTTCGCCTTGACATTATCA-ATGGTATCCGAGCT---CTC 191297 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||| | || ||||| || ||||| || ||||| || || |||||||| Sbjct 191298 CACCTCAAGGGTGATCGTCTTTCCCGTGAGGGTCTTCACAAAGATCTGCAT 191348 >seq630 Length=471042 Score = 143 bits (158), Expect = 2e-29 Identities = 178/241 (74%), Gaps = 2/241 (1%) Strand=Plus/Plus Query 41634 CGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGG 41693 |||| || || || || | || || || || ||| ||||||||| ||||| || |||| Sbjct 35871 CGCCACCCCGGAGGCGGAGGACGAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCGG 35930 Query 41694 AGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGG 41753 ||||||||| |||| ||||||||||| |||||||| || |||||||| ||||| | | Sbjct 35931 CGAGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATGAGGCGCTGCTGGTCTGGTG 35990 Query 41754 GAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCC 41812 | | || |||||||||| ||| || ||| ||| | | | |||||| ||||| Sbjct 35991 GGATGCCCTCCTTGTCCTGGATCTTGGACTT-GACGTTGTCGATGGTGTCGGAGGACTCT 36049 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTTATCGATG 41872 |||| | || || || || ||||| || ||||| ||||| ||||||||||| || || Sbjct 36050 GCCTCGAGGGTAATAGTCTTCCCCGTGAGGGTCTTCACGAAGATCTGCATGTTGGCGGTG 36109 Query 41873 G 41873 | Sbjct 36110 G 36110 >seq281 Length=803475 Score = 122 bits (134), Expect = 8e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| ||||| | || || || || ||| ||| || || || || || |||| Sbjct 254954 GCCACCGCGGAGACGGAGGACGAGGTGGAGGGTGGACTCTTTTTGGATATTGTAATCGGC 254895 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||| || || |||| || ||||||||||||||||| || || || || ||||||| ||| Sbjct 254894 GAGAGTCCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATAAGACGTTGCTGGTCCGGGGG 254835 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | || |||||||||| || | || || | |||| | | | ||||| ||||| | Sbjct 254834 TATGCCCTCCTTGTCC-TGGATCTTGGCCTTAACGTTGTCGATCGTGTCCGAGGACTCGA 254776 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| | || || || || || || || ||||| ||||| |||||||| Sbjct 254775 CCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 254727 >seq4 Length=3455462 Score = 114 bits (126), Expect = 1e-20 Identities = 165/229 (72%), Gaps = 3/229 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || || || | || || || || ||| ||||| ||||| || ||||||| Sbjct 2201497 GCCACCACGGAGGCGGAGGACAAGGTGAAGGGTGGATTCCTT-TGAATATTGTAGTCGGC 2201555 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || ||||| | || ||||||||||||||||| || |||| ||||| ||||| | ||| Sbjct 2201556 CAGAGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATCAAACGCTGCTGGTCTGGGGG 2201615 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | || |||||||||| || | ||||| | ||| | | | || || ||||||| Sbjct 2201616 GATGCCCTCCTTGTCC-TGGATCTTTGCCTTGACGTTGTCAATGGTATCCGAGGACTCCA 2201674 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| | || || || || || || || ||||| ||||| |||||||| Sbjct 2201675 CCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 2201723 >seq297 Length=752846 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || || || || || || ||||||||||| ||||| | Sbjct 218385 CCACCACGGAGACGCAGGACAAGGTGAAGAGTTGATTCTTTCTGAATGTTGTAGTCTGCA 218326 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || || |||||||| ||||| || || |||||||| || || | ||| Sbjct 218325 AGAGTGCGACCATCCTCCAGCTGCTTCCCGGCAAAGATGAGGCGCTGCTGATCAGGGGGT 218266 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTTCA-ACGACGACACAGTGTCGCTCGACTCCA 41813 | || |||||||||| ||| | |||| ||||| | | | | ||||| ||||| Sbjct 218265 ATGCCCTCCTTGTCC-TGAATCTTTGTCTTCACATTATCA-ATGGTGTCAGAACTCTCCA 218208 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||| || || || || || || | ||||| || || |||||||| Sbjct 218207 CCTCCAAGGTAATTGTCTTCCCTGTTAAAGTCTTAACAAAGATCTGCAT 218159 Score = 87.8 bits (96), Expect = 2e-12 Identities = 137/192 (71%), Gaps = 3/192 (2%) Strand=Plus/Minus Query 41672 TCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 41731 |||||||||||||| || || | || ||||| | || || || ||||| || || || Sbjct 218123 TCCTTCTGAATGTTGTAATCTGCCAGCGTGCGTCCATCCTCAAGTTGCTTTCCAGCAAAG 218064 Query 41732 ATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGAC 41791 || || ||||| ||||| | ||| || ||||||||| ||| | ||||| | || Sbjct 218063 ATAAGACGCTGCTGGTCTGGAGGATTCCT-TCCTTGTCC-TGAATCTTTGCCTTGACATT 218006 Query 41792 GAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850 | | |||||| ||||||||||| || ||||| || || ||||| ||||| || Sbjct 218005 ATCAATGGTGTCGGAGCTCTCCACCTCCAAAGTGATCGTCTTCCCTGTCAGAGTCTTGAC 217946 Query 41851 GAAAATCTGCAT 41862 || |||||||| Sbjct 217945 AAAGATCTGCAT 217934 >seq26 Length=2273700 Score = 87.8 bits (96), Expect = 2e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 || ||||| ||||| ||| ||||||||||| ||||| | || ||||| | || || Sbjct 441582 ACAAGATGGAGCGTCGACTCTTTCTGAATGTTGTAGTCAGCCAGTGTGCGACCATCCTCA 441523 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTC 41769 ||||| ||||||||||| || || | ||||||||| | || | || ||||||||| Sbjct 441522 AGCTGTTTGCCGGCGAAAATAAGCCTCTGTTGGTCTGGAGGGATGCCCTCCTTGTC 441467 Score = 82.4 bits (90), Expect = 7e-11 Identities = 163/236 (69%), Gaps = 18/236 (8%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | || ||||| || ||| || ||||| ||||| ||||| | Sbjct 490975 CCACCACGAAGGCGCAGGACAAGATGAAGAGTGGATTCTTTCTGGATGTTGTAGTCTGCT 490916 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC-GGG 41754 ||||| ||| | || || |||||||| || || || || || | ||| ||||| | ||| Sbjct 490915 AGGGTACGCCCATCCTCAAGCTGCTTACCAGCAAAAATGAGCCTCTGCTGGTCAGGAGGG 490856 Query 41755 AACGCTCTCCTTGTCCATGATTTT----TTG-CTTCAACGACGACACAGTGTCGCTCGA- 41808 | | || ||||||||| ||| || ||| | | | ||| | ||||| ||| Sbjct 490855 ATCCCT-TCCTTGTCCTGGATCTTGGCCTTGACATTATCGATG-----GTGTC---CGAG 490805 Query 41809 --CTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||| |||| || || || || || || || ||||| || ||||||||||| Sbjct 490804 CTCTCCACTTCCAAAGTGATGGTCTTCCCAGTGAGGGTCTTCACAAAAATCTGCAT 490749 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462149382427200