Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ensete_20ventricosum_20[genbank_20GCA_5F000818735.2_202015-11-23] 45,745 sequences; 451,284,018 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq5201 104 2e-17 seq1503 104 2e-17 seq948 100 2e-16 seq1389 93.3 4e-14 >seq5201 Length=23257 Score = 104 bits (114), Expect = 2e-17 Identities = 146/201 (73%), Gaps = 8/201 (4%) Strand=Plus/Plus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 |||||| || || || || || ||||| || || |||| || ||||| ||||| || || Sbjct 11100 CTCTTTCTGGATGTTGTAGTCCGCAAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 11159 Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212 || || | |||||||||| || | || |||||||||| ||| || ||||| ||| Sbjct 11160 GATGAGCCTTTGCTGGTCGGGAGGGATGCCCTCTTTGTCCTGGATCTTAGCTTTGA-CGT 11218 Query 39213 CGCC-ACCGTATCGCTCGA---CTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTT 39268 | | | || || ||| |||||| || | ||||| ||||||| || ||||| | Sbjct 11219 TGTCGATGGTGTC---CGAGCTCTCCACCTCGAGGGTGATGGTTTTTCCAGTGAGCGTCT 11275 Query 39269 TAACAAAGATTTGCATCTTTA 39289 |||||||||| ||||||| || Sbjct 11276 TAACAAAGATCTGCATCTGTA 11296 >seq1503 Length=43560 Score = 104 bits (114), Expect = 2e-17 Identities = 159/224 (71%), Gaps = 2/224 (1%) Strand=Plus/Plus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | ||||| || || ||| ||| || || || ||||| ||||| || || || | Sbjct 30450 GCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTATAGTCGGCGAGAGTGCGGCC 30509 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 ||| || ||||| || || || || || || ||||||||||| | || | || ||| || Sbjct 30510 GTCCTCCAGCTGCTTCCCTGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTT 30569 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGA 39247 |||| ||| ||| || | ||| | | | ||| || ||||||||| || | |||| Sbjct 30570 GTCCTGGATCTTCGCCTTCA-CGTTGTCGATCGTGTCCGACGACTCCACCTCAAGGGTGA 30628 Query 39248 TACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTTACG 39291 | | || ||||||| ||| || || ||||| |||||| | ||| Sbjct 30629 TCGTCTTCCCCGTCAACGTCTTCACGAAGATCTGCATCCTGACG 30672 >seq948 Length=51001 Score = 100 bits (110), Expect = 2e-16 Identities = 150/208 (72%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || || ||| |||||| || || || || ||||| || || || |||| |||||||| Sbjct 18923 TGGAGAGTGGACTCTTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCAAGCTGC 18864 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGT-CGGTGGGCACGCTCTCTTTGTCCATGATTTT 39200 || || |||||||| || |||||||||| ||| ||| | || || |||||| ||| || Sbjct 18863 TTCCCGGCAAATATGAGGCGCTGCTGGTCCGGCGGGATCCCT-TCCTTGTCCTGGATCTT 18805 Query 39201 CTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCG 39259 | |||| ||| | | | || || |||||||| || | |||||| | || || | Sbjct 18804 CGCCTTGA-CGTTGTCGATGGTGTCCGAAGACTCCACCTCGAGGGTGATAGTCTTCCCGG 18746 Query 39260 TCAGCGTTTTAACAAAGATTTGCATCTT 39287 | || || || || ||||| |||||||| Sbjct 18745 TGAGGGTCTTCACGAAGATCTGCATCTT 18718 >seq1389 Length=44750 Score = 93.3 bits (102), Expect = 4e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 39045 AAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTAT 39104 |||| | | || ||||| || | || ||||||| ||| |||||| ||| || ||||| Sbjct 22546 AAATATCTGCATCCCTCCCCTGAGTCGCAACACCAGATGGAGCGTGGACTCCTTCTGTAT 22605 Query 39105 ATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTG 39164 || ||||||||||| || || |||| || |||||||| || ||||| || || | || Sbjct 22606 GTTGTAATCGGCAAGAGTGCGGCCGTCTTCGAGCTGTTTTCCTGCAAAGATGAGCCTTTG 22665 Query 39165 CTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTT 39200 |||||| | || | | ||| |||||| ||| || Sbjct 22666 CTGGTCCGGCGGGATTCCCTCCTTGTCCTGGATCTT 22701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429306120945185