Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq7324 95.1 9e-15 seq6726 86.0 5e-12 seq2383 84.2 2e-11 >seq7324 Length=11911 Score = 95.1 bits (104), Expect = 9e-15 Identities = 97/124 (78%), Gaps = 2/124 (2%) Strand=Plus/Minus Query 101755 GACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAA 101814 |||||||||||||||| | || | ||||||||| |||||||| ||||| ||||| | Sbjct 6916 GACATGAGCAATCATGTATGTGAGAAGAGAATACGATGCAATGTTGAATGGAACTCCAAG 6857 Query 101815 CCCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCC-ATCACAGACATAAA 101873 ||||| ||||| || | |||||||| ||| ||||| |||| || || || ||||||| Sbjct 6856 ACCCATGTCAGCAGAGCGTTGATACATTTGGCAGGATAGCTCCCCGTTCTCA-ACATAAA 6798 Query 101874 ATTG 101877 | || Sbjct 6797 ACTG 6794 Score = 95.1 bits (104), Expect = 9e-15 Identities = 97/124 (78%), Gaps = 2/124 (2%) Strand=Plus/Minus Query 101755 GACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAA 101814 |||||||||||||||| | || | ||||||||| |||||||| ||||| ||||| | Sbjct 8858 GACATGAGCAATCATGTATGTGAGAAGAGAATACGATGCAATGTTGAATGGAACTCCAAG 8799 Query 101815 CCCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCC-ATCACAGACATAAA 101873 ||||| ||||| || | |||||||| ||| ||||| |||| || || || ||||||| Sbjct 8798 ACCCATGTCAGCAGAGCGTTGATACATTTGGCAGGATAGCTCCCCGTTCTCA-ACATAAA 8740 Query 101874 ATTG 101877 | || Sbjct 8739 ACTG 8736 >seq6726 Length=16438 Score = 86.0 bits (94), Expect = 5e-12 Identities = 95/124 (77%), Gaps = 2/124 (2%) Strand=Plus/Minus Query 101755 GACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAA 101814 ||| |||||||||||| | || | ||||||||| |||||| | ||||| ||||| | Sbjct 457 GACTTGAGCAATCATGTATGTGAGAAGAGAATACGATGCAATGCTGAATGGAACTCCAAG 398 Query 101815 CCCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCC-ATCACAGACATAAA 101873 ||||| ||||| || | |||||||| ||| ||||| |||| || || || ||||||| Sbjct 397 ACCCATGTCAGCAGAGCGTTGATACATTTGGCAGGATAGCTCCCCGTTCTCA-ACATAAA 339 Query 101874 ATTG 101877 | || Sbjct 338 ACTG 335 >seq2383 Length=86320 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/123 (76%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 101756 ACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAAC 101815 || |||||||||||| | || | ||| ||||| |||||||| ||||| ||||| | Sbjct 75224 ACTTGAGCAATCATGTACGTGAGAAGCGAATATGATGCAATGTTGAATGGAACTCCAAGA 75165 Query 101816 CCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCT-TTCCATCACAGACATAAAA 101874 ||||| ||||| || | |||||||| ||| ||||| |||| || || || |||||||| Sbjct 75164 CCCATGTCAGCAGAGCGTTGATACATTTGGCAGGATAGCTCCTCGTTCTCA-ACATAAAA 75106 Query 101875 TTG 101877 || Sbjct 75105 CTG 75103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361190076635633