Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq1442 105 8e-18 seq3014 96.9 4e-15 >seq1442 Length=121472 Score = 105 bits (116), Expect = 8e-18 Identities = 128/172 (74%), Gaps = 2/172 (1%) Strand=Plus/Minus Query 53923 TTCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCC 53982 ||||||||| ||| |||||||||| |||||||| || ||||| | |||| || Sbjct 113319 TTCTCTTTCATATCTTGTATACAATTTCTCAAACTCCTCACCCCAGCAGTCAGCCAACCC 113260 Query 53983 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAA 54042 ||| ||||| ||||| | || |||||||||||||| || || ||||| || ||| || Sbjct 113259 TGGAGCTTCATTGGGACAAAACAGCGACCACTCTCCGTTATTCTGCACTCTTTGCATGAA 113200 Query 54043 GAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTC 54093 | |||||||| ||| || || ||| || ||||| || | | ||| ||||| Sbjct 113199 TAAATCAGGAACCCATAGTGC-ATAGAAAAGATCCCTTGCACGATGCTCCTC 113149 >seq3014 Length=68818 Score = 96.9 bits (106), Expect = 4e-15 Identities = 126/172 (73%), Gaps = 2/172 (1%) Strand=Plus/Plus Query 53923 TTCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCC 53982 ||||||||| ||| |||||||||| |||||||| || ||||| | |||| || Sbjct 2821 TTCTCTTTCATATCTTGTATACAATTTCTCAAACTCCTCACCCCAGCAGTCAGCCAACCC 2880 Query 53983 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAA 54042 ||| ||||| ||||| | || |||||||||||| | || || ||||| || ||| || Sbjct 2881 TGGAGCTTCATTGGGACAAAACAGCGACCACTCTCCATTATTCTGCACTCTTTGCATGAA 2940 Query 54043 GAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTC 54093 | |||||||| ||| | || ||| || ||||| || | | ||| ||||| Sbjct 2941 CAAATCAGGAACCCATAATGC-ATAGAAAAGATCCCTTGCACGATGCTCCTC 2991 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 54178 TTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAAT 54237 |||| ||| || ||||| | || | || || | ||| | || | |||||| |||| Sbjct 3584 TTTGCCTCCGCCTTGATCAACATAACGTGCAGTATCATTGAAGACACGCAACATAGGAAC 3643 Query 54238 AATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACT 54297 || ||||| || | ||||| || || |||||| || ||| | || |||||||| Sbjct 3644 TATCCCATTTGAGGTTCCATTTGTTCCTCGGATATAACTGCCAGTAGCTCGAATATTGTG 3703 Query 54298 AATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATC 54357 || ||| | ||| || ||||| || ||| || | ||| ||| || | ||||| Sbjct 3704 AACTGAGACACCAATTCCCCCAGCAGATTTGCTTATGACTGCACATTCCTTCAGAGTATC 3763 Query 54358 ATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 54405 |||||| ||||| || || ||||| ||||| || || |||||||| Sbjct 3764 ATAGATTCCCTCAATGCTGTCATCTTTCATGCAAATGAGGAAACAGCT 3811 Score = 86.0 bits (94), Expect = 7e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 54424 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 54483 ||| || ||||| || | || || ||||| || |||||||| | ||| | |||| Sbjct 3913 AGTGCCGGCATTGAAAAGTGTTGGTGAAGCATGTGTAAACCAGCGCTGAGACATCAGATG 3972 Query 54484 GTACGTCTCGATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTA 54542 ||| || | |||||| || || || || | ||| || || || |||| || | ||||| Sbjct 3973 GTATGTTTTGATAGCGGATTCAATGTCATCCTTG-TGTATACCCACTGAAACTCTCATTA 4031 Query 54543 ACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCA 54602 ||||||||| ||||||||||| | ||| | |||| | ||| || | |||| Sbjct 4032 GCATGTGCTGTGGTCTTTCAACAACCTTCCCACCAAGCTTCAAGAGGTAAGACCTCTCCA 4091 Query 54603 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 54651 ||| || || ||||| |||| || ||||| | ||||||||||| Sbjct 4092 GAGTCTTGAATCCAAAGTAGTCATAGTCGAAGTCCCTATCGTAAATAAT 4140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593618567037840