Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq159 89.7 8e-13 seq2233 86.0 9e-12 >seq159 Length=296457 Score = 89.7 bits (98), Expect = 8e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 |||||||| ||||| || | |||||||| | || || ||||| || || ||||| Sbjct 19284 GTTCCACCCCTAAGCCTCAGGACCAAATGAAGTGTCGACTCTTTCTGAATGTTGTAATCA 19343 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | | || || | ||| || ||||| || ||||||||||||| |||||||| || ||| Sbjct 19344 GCTAATGTCCTCCCATCTTCCAATTGCTTACCAGCAAAAATCAGCCTTTGCTGGTCTGGA 19403 Query 146168 GGAATTCCTTCTTTATC 146184 ||||| ||||| || || Sbjct 19404 GGAATGCCTTCCTTGTC 19420 >seq2233 Length=91068 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 |||||||| ||||| || | || ||||| | || || ||||| || || ||||| Sbjct 79846 GTTCCACCCCTAAGCCTCAGGACTAAATGAAGTGTCGACTCTTTCTGAATGTTGTAATCA 79787 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | | || || | ||| || ||||| || ||||||||||||| |||||||| || ||| Sbjct 79786 GCTAATGTCCTCCCATCTTCCAATTGCTTACCAGCAAAAATCAGCCTTTGCTGGTCTGGA 79727 Query 146168 GGAATTCCTTCTTTATC 146184 ||||| ||||| || || Sbjct 79726 GGAATGCCTTCCTTGTC 79710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743397370287360