Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq2383 93.3 3e-14 seq7324 82.4 6e-11 >seq2383 Length=86320 Score = 93.3 bits (102), Expect = 3e-14 Identities = 95/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 20430 CCAATTTTACGTTGCTAATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATAT 20489 ||| ||||| |||| || | || | || || |||||||||||||| || ||||| || Sbjct 75102 CCAGTTTTATGTTGAGAACGAGGAGCTATCCTGCCAAATGTATCAACGCTCTGCTGACAT 75161 Query 20490 GGGACTGGGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACA 20549 ||| || || ||||| ||||| |||||| ||| |||| || ||||| |||||||| || Sbjct 75162 GGGTCTTGGAGTTCCATTCAACATTGCATCATATTCGCTTCTCACGTACATGATTGCTCA 75221 Query 20550 TGTT 20553 ||| Sbjct 75222 AGTT 75225 >seq7324 Length=11911 Score = 82.4 bits (90), Expect = 6e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 20430 CCAATTTTACGTTGCTAATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATAT 20489 ||| ||||| |||| || || | || || |||||||||||||| || ||||| || Sbjct 6793 CCAGTTTTATGTTGAGAACGGGGAGCTATCCTGCCAAATGTATCAACGCTCTGCTGACAT 6852 Query 20490 GGGACTGGGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACA 20549 ||| || || ||||| ||||| |||||| ||| | || || || || |||||||| || Sbjct 6853 GGGTCTTGGAGTTCCATTCAACATTGCATCGTATTCTCTTCTCACATACATGATTGCTCA 6912 Query 20550 TGT 20552 ||| Sbjct 6913 TGT 6915 Score = 82.4 bits (90), Expect = 6e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 20430 CCAATTTTACGTTGCTAATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATAT 20489 ||| ||||| |||| || || | || || |||||||||||||| || ||||| || Sbjct 8735 CCAGTTTTATGTTGAGAACGGGGAGCTATCCTGCCAAATGTATCAACGCTCTGCTGACAT 8794 Query 20490 GGGACTGGGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACA 20549 ||| || || ||||| ||||| |||||| ||| | || || || || |||||||| || Sbjct 8795 GGGTCTTGGAGTTCCATTCAACATTGCATCGTATTCTCTTCTCACATACATGATTGCTCA 8854 Query 20550 TGT 20552 ||| Sbjct 8855 TGT 8857 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399116458441435