Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq3634 107 4e-18 seq1443 104 5e-17 seq3014 100 6e-16 seq1442 95.1 3e-14 >seq3634 Length=55208 Score = 107 bits (118), Expect = 4e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 157258 GTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTCCAT 157317 ||||||| | || | ||||| || ||||||||||| ||||| || || || | ||||| Sbjct 248 GTACTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATTAGCTCCAT 307 Query 157318 CCACTCGAATGGGTTGGCGCAGTTGTACACCTTGTCGTACCCCAGCTGGTTCAGCCAGTA 157377 ||| ||||||||||||||| |||||||| ||| | || |||||| | ||| | Sbjct 308 CCAGTCGAATGGGTTGGCGACGTTGTACATCTTCTTGTGGCCCAGCGCCATGAGCAGGCG 367 Query 157378 GTCCGCCACAAACTTGATGTACTCTGTCATGCTCTTCTCGCTGATACCGATGAGCGCGAC 157437 ||| || || |||| |||||||| ||||| | || | || |||| ||||||| Sbjct 368 GTCGGCGACGAACTCGATGTACTGGCTCATGAGCACGCCGTTCATGCCGACGAGCGCGCA 427 Query 157438 GGGAAGCGCCGACG-AAATGAATTCGCACTC 157467 || |||| || || | | ||| |||| ||| Sbjct 428 TGGGAGCG-CGTCGCAGACGAACTCGCGCTC 457 >seq1443 Length=121453 Score = 104 bits (114), Expect = 5e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 157258 GTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTCCAT 157317 ||||||| | || | ||||| || ||||||||||| ||||| || || || | ||||| Sbjct 25380 GTACTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTCCAT 25439 Query 157318 CCACTCGAATGGGTTGGCGCAGTTGTACACCTTGTCGTACCCCAGCTGGTTCAGCCAGTA 157377 ||| ||||||||||||| | |||||||| ||| | || |||||| | ||| | Sbjct 25440 CCAGTCGAATGGGTTGGTGACGTTGTACATCTTCTTGTGCCCCAGTGCCATGAGCAGGCG 25499 Query 157378 GTCCGCCACAAACTTGATGTACTCTGTCATGCTCTTCTCGCTGATACCGATGAGCGCGAC 157437 ||| || || |||| |||||||| ||||| | || | || |||| ||||||| Sbjct 25500 GTCGGCGACGAACTCGATGTACTGGCTCATGAGCACGCCGTTCATGCCGACGAGCGCGCA 25559 Query 157438 GGGAAGCGCCGACG-AAATGAATTCGCACTC 157467 || |||| || || | | ||| |||| ||| Sbjct 25560 TGGGAGCG-CGTCGCAGACGAACTCGCGCTC 25589 >seq3014 Length=68818 Score = 100 bits (110), Expect = 6e-16 Identities = 167/239 (70%), Gaps = 2/239 (1%) Strand=Plus/Minus Query 248783 TGGACGGCGCGATTGACTACGGCAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACGC 248842 ||||| ||| |||| |||| | || || || || || | ||||| ||||| || | Sbjct 4151 TGGACAGCGAGATTATTTACGATAGGGACTTCGACTATGACTACTTTGGATTCAAGACTC 4092 Query 248843 TGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATTCAGCACATGT 248902 |||||| || || ||| | || ||| ||| ||| | || ||| || ||||||||| Sbjct 4091 TGGAGAGGTCTTACCTCTTGAAGCTTGGTGGGAAGGTTGTTGAAAGACCACAGCACATGC 4032 Query 248903 TGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAGCGTGCTCGAGACGTA-C 248961 | ||| |||| | || || || |||||||||||||| || || || | || || | Sbjct 4031 TAATGAGAGTTTCAGTGGGTATACACAAGGATGACATTGAATCCGCTATCAAAACATACC 3972 Query 248962 ACCGGAATGAGTGAACGCTGGATGACACATGCCACACCGACGCTCTTCAACGCCGGTAC 249020 | | | ||| | | |||||| | |||||||| |||| || || ||||| ||||| || Sbjct 3971 ATCTG-ATGTCTCAGCGCTGGTTTACACATGCTTCACCAACACTTTTCAATGCCGGCAC 3914 >seq1442 Length=121472 Score = 95.1 bits (104), Expect = 3e-14 Identities = 166/239 (69%), Gaps = 2/239 (1%) Strand=Plus/Plus Query 248783 TGGACGGCGCGATTGACTACGGCAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACGC 248842 ||||| ||| ||| |||| | || || || || || | ||||| ||||| || | Sbjct 111996 TGGACAGCGAGATCATTTACGATAGGGACTTCGACTATGACTACTTTGGGTTCAAGACTC 112055 Query 248843 TGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATTCAGCACATGT 248902 |||||| || || ||| | || ||| ||| ||| | || ||| || ||||| ||| Sbjct 112056 TGGAGAGGTCTTACCTCTTGAAGCTTGGTGGGAAGGTTGTTGAAAGACCACAGCATATGC 112115 Query 248903 TGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAGCGTGCTCGAGACGTA-C 248961 | ||| |||| | || || || |||||||||||||| || || || | || || | Sbjct 112116 TAATGAGAGTTTCAGTGGGTATACACAAGGATGACATTGAAGCCGCTATCAAAACATACC 112175 Query 248962 ACCGGAATGAGTGAACGCTGGATGACACATGCCACACCGACGCTCTTCAACGCCGGTAC 249020 ||| | ||| | | |||||| | |||||||| |||| || || ||||| ||||| || Sbjct 112176 ACCTG-ATGTCTCAGCGCTGGTTTACACATGCTTCACCAACTCTTTTCAATGCCGGCAC 112233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073575402794944