Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq1091 98.7 8e-16 seq70 89.7 4e-13 seq159 86.0 5e-12 seq2233 82.4 6e-11 >seq1091 Length=144125 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || ||||| || | || || | ||| || || || || ||||| ||||||||||| ||| Sbjct 81461 CCACCCCGCAGACGCAGGACAAGGTGGAGAGTAGACTCCTTTTGGATGTTGTAGTCAGCC 81402 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| || ||| || | ||| ||||| ||| |||| || || || || ||| ||| Sbjct 81401 AATGTACGACCATCCTCGAGTTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCCGGGGGG 81342 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||| ||||| || || | |||||| | ||| ||||||| | |||| Sbjct 81341 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATAGTGTCAGAGCTCTCGACC 81282 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | ||||| | |||||||||| || || ||||| |||||||| Sbjct 81281 TCCAACGTGATTGTCTTGCCGGTCAGGGTCTTCACAAAGATTTGCAT 81235 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || ||||| || | || || | ||| || || || || ||||| ||||||||||| ||| Sbjct 81029 CCACCCCGCAGACGCAGGACAAGGTGGAGAGTAGACTCCTTTTGGATGTTGTAGTCAGCC 80970 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| || ||| || | ||| ||||| ||| |||| || || || || ||| ||| Sbjct 80969 AATGTACGACCATCCTCGAGTTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCCGGGGGG 80910 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||| |||||||| ||| | ||| || | ||| ||| ||| ||| Sbjct 80909 ATGCCCTCCTTATCCTGAATCTTGGCCTTAACATTGTCAATAGTATCAGAACTCTCAACC 80850 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | |||||| | ||||| |||| ||||| ||||| || ||||| Sbjct 80849 TCGAGAGTGATGGTCTTGCCAGTCAGGGTTTTAACAAAGATCTGCAT 80803 >seq70 Length=369686 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||||| || | ||| || | ||| ||||| || ||||| ||||||||||| || ||| Sbjct 289473 CCTCCCCTGAGGCGAAGGACAAGGTGGAGTGTGGACTCTTTCTGAATGTTGTAATCAGCC 289414 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| | ||| || | ||| ||||| ||| |||| || | || || ||| || Sbjct 289413 AGAGTTCGGCCATCCTCAAGTTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCCGGTGGG 289354 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||| ||||| || ||| | ||| || | | | |||||| || |||| Sbjct 289353 ATGCCCTCCTTGTCTTGAATCTTCACCTTAACATTGTCGATAGTGTCTGAGGACTCGACC 289294 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| ||||| | |||||||| | || || |||||||| ||||| Sbjct 289293 TCAAGAGTGATCGTCTTGCCGGTGAGGGTCTTGACAAAAATCTGCAT 289247 >seq159 Length=296457 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| |||| || || || |||| |||||||| || ||||| ||||||||||| || || Sbjct 19286 TCCACCCCTAAGCCTCAGGACCAAATGAAGTGTCGACTCTTTCTGAATGTTGTAATCAGC 19345 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | ||| | | |||||||||||| || || ||| | || || ||||| || || || Sbjct 19346 TAATGTCCTCCCATCTTCCAATTGCTTACCAGCAAAAATCAGCCTTTGCTGGTCTGGAGG 19405 Query 18218 CACGCCTTCCTTATC 18232 | ||||||||| || Sbjct 19406 AATGCCTTCCTTGTC 19420 >seq2233 Length=91068 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| |||| || || || || | |||||||| || ||||| ||||||||||| || || Sbjct 79844 TCCACCCCTAAGCCTCAGGACTAAATGAAGTGTCGACTCTTTCTGAATGTTGTAATCAGC 79785 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | ||| | | |||||||||||| || || ||| | || || ||||| || || || Sbjct 79784 TAATGTCCTCCCATCTTCCAATTGCTTACCAGCAAAAATCAGCCTTTGCTGGTCTGGAGG 79725 Query 18218 CACGCCTTCCTTATC 18232 | ||||||||| || Sbjct 79724 AATGCCTTCCTTGTC 79710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379279815350835