Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq3014 96.9 5e-15 seq1442 96.9 5e-15 >seq3014 Length=68818 Score = 96.9 bits (106), Expect = 5e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 66209 TTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAAT 66268 |||| ||| || ||||| | || | || || | ||| | || | |||||| |||| Sbjct 3584 TTTGCCTCCGCCTTGATCAACATAACGTGCAGTATCATTGAAGACACGCAACATAGGAAC 3643 Query 66269 AATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACT 66328 || ||||| || || ||||| || || |||||| || ||| | || |||||||| Sbjct 3644 TATCCCATTTGAGGTTCCATTTGTTCCTCGGATATAACTGCCAGTAGCTCGAATATTGTG 3703 Query 66329 AATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATC 66388 || ||| | ||| |||||||| || ||| || | ||| ||| || | ||||| Sbjct 3704 AACTGAGACACCAATTCCCCCAGCAGATTTGCTTATGACTGCACATTCCTTCAGAGTATC 3763 Query 66389 ATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 66436 |||||| ||||| || || ||||| ||||| || || |||||||| Sbjct 3764 ATAGATTCCCTCAATGCTGTCATCTTTCATGCAAATGAGGAAACAGCT 3811 Score = 87.8 bits (96), Expect = 2e-12 Identities = 124/172 (72%), Gaps = 2/172 (1%) Strand=Plus/Plus Query 65954 TTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCC 66013 ||||||||| ||| |||||||||| || ||||| || ||||| | |||| || Sbjct 2821 TTCTCTTTCATATCTTGTATACAATTTCTCAAACTCCTCACCCCAGCAGTCAGCCAACCC 2880 Query 66014 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAA 66073 ||| ||||| ||||| | || |||||||||||| | || || ||||| || ||| || Sbjct 2881 TGGAGCTTCATTGGGACAAAACAGCGACCACTCTCCATTATTCTGCACTCTTTGCATGAA 2940 Query 66074 GAGATCAGGAATCCAAAGAGCTATA-AATAAATCTCTGGTTCTATGTTCCTC 66124 | |||||||| ||| | || ||| || | ||| || | | ||| ||||| Sbjct 2941 CAAATCAGGAACCCATAATGC-ATAGAAAAGATCCCTTGCACGATGCTCCTC 2991 Score = 86.0 bits (94), Expect = 8e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 66455 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 66514 ||| || ||||| || | || || ||||| || |||||||| | ||| | |||| Sbjct 3913 AGTGCCGGCATTGAAAAGTGTTGGTGAAGCATGTGTAAACCAGCGCTGAGACATCAGATG 3972 Query 66515 GTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTA 66573 ||| || | ||||| || || || || | ||| || || || |||| || | ||||| Sbjct 3973 GTATGTTTTGATAGCGGATTCAATGTCATCCTTG-TGTATACCCACTGAAACTCTCATTA 4031 Query 66574 ACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCA 66633 ||||||||| ||||||||||| | ||| | ||||| | ||| || | |||| Sbjct 4032 GCATGTGCTGTGGTCTTTCAACAACCTTCCCACCAAGCTTCAAGAGGTAAGACCTCTCCA 4091 Query 66634 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 66682 ||| || || ||||| |||| || ||||| | ||||||||||| Sbjct 4092 GAGTCTTGAATCCAAAGTAGTCATAGTCGAAGTCCCTATCGTAAATAAT 4140 >seq1442 Length=121472 Score = 96.9 bits (106), Expect = 5e-15 Identities = 126/172 (73%), Gaps = 2/172 (1%) Strand=Plus/Minus Query 65954 TTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCC 66013 ||||||||| ||| |||||||||| || ||||| || ||||| | |||| || Sbjct 113319 TTCTCTTTCATATCTTGTATACAATTTCTCAAACTCCTCACCCCAGCAGTCAGCCAACCC 113260 Query 66014 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAA 66073 ||| ||||| ||||| | || |||||||||||||| || || ||||| || ||| || Sbjct 113259 TGGAGCTTCATTGGGACAAAACAGCGACCACTCTCCGTTATTCTGCACTCTTTGCATGAA 113200 Query 66074 GAGATCAGGAATCCAAAGAGCTATA-AATAAATCTCTGGTTCTATGTTCCTC 66124 | |||||||| ||| || || ||| || | ||| || | | ||| ||||| Sbjct 113199 TAAATCAGGAACCCATAGTGC-ATAGAAAAGATCCCTTGCACGATGCTCCTC 113149 Score = 89.7 bits (98), Expect = 7e-13 Identities = 127/179 (71%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 66258 AACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCA 66317 ||||| |||| || ||||| || || ||||| || || |||||| || ||| | || Sbjct 112513 AACATAGGAACTATCCCATTTGAGGTTCCATTTGTTCCTCGGATATAACTGCCAGTAGCT 112454 Query 66318 CGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGT 66377 |||||||| || ||| | ||| |||||||| || ||| || | ||| ||| Sbjct 112453 CGAATATTGTGAACTGAGACACCAATTCCCCCAGCAGATTTGCTTATGACTGCACATTCC 112394 Query 66378 TTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 66436 || | ||||||||||| ||||| || || ||||| ||||| || || |||||||| Sbjct 112393 TTCAGAGTATCATAGATTCCCTCAATGCTGTCATCTTTCATGCAAATGAGGAAACAGCT 112335 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658058582337720