Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq3014 102 1e-16 seq1442 93.3 6e-14 >seq3014 Length=68818 Score = 102 bits (112), Expect = 1e-16 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 80085 TCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG 80144 || |||| ||| || ||||| | || | || || | ||| | || | |||||| || Sbjct 3581 TCTTTTGCCTCCGCCTTGATCAACATAACGTGCAGTATCATTGAAGACACGCAACATAGG 3640 Query 80145 AATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATT 80204 || || ||||| || || ||||| || || |||||| || ||| | || |||||||| Sbjct 3641 AACTATCCCATTTGAGGTTCCATTTGTTCCTCGGATATAACTGCCAGTAGCTCGAATATT 3700 Query 80205 ACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGT 80264 || ||| | ||| |||||||| || ||| || | ||| ||| || | || Sbjct 3701 GTGAACTGAGACACCAATTCCCCCAGCAGATTTGCTTATGACTGCACATTCCTTCAGAGT 3760 Query 80265 ATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCT 80315 ||||||||| ||||| ||||| ||||| ||||| || || |||||||| Sbjct 3761 ATCATAGATTCCCTCAATGCTGTCATCTTTCATGCAAATGAGGAAACAGCT 3811 Score = 100 bits (110), Expect = 4e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 80334 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 80393 ||| || ||||| || | || || ||||| || |||||||| | ||||| |||| Sbjct 3913 AGTGCCGGCATTGAAAAGTGTTGGTGAAGCATGTGTAAACCAGCGCTGAGACATCAGATG 3972 Query 80394 GTACGTCTCAATAGCTGATTCTATATCC-CATTGATGAATTCCTACCGCGACACGCATTA 80452 ||| || | ||||| ||||| || || | ||| || || || || | || | ||||| Sbjct 3973 GTATGTTTTGATAGCGGATTCAATGTCATCCTTG-TGTATACCCACTGAAACTCTCATTA 4031 Query 80453 ACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCA 80512 ||||||||| ||||||||||| | ||| | | ||||| | |||||| | |||| Sbjct 4032 GCATGTGCTGTGGTCTTTCAACAACCTTCCCACCAAGCTTCAAGAGGTAAGACCTCTCCA 4091 Query 80513 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 80561 ||| || || ||||| |||| || ||||| | ||||||||||| Sbjct 4092 GAGTCTTGAATCCAAAGTAGTCATAGTCGAAGTCCCTATCGTAAATAAT 4140 Score = 87.8 bits (96), Expect = 3e-12 Identities = 124/172 (72%), Gaps = 2/172 (1%) Strand=Plus/Plus Query 79833 TTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCC 79892 ||||||||| ||| |||||| ||| || ||||| || ||||| || | || || Sbjct 2821 TTCTCTTTCATATCTTGTATACAATTTCTCAAACTCCTCACCCCAGCAGTCAGCCAACCC 2880 Query 79893 AGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAA 79952 ||| ||| | ||||| | || |||||||||||||| || || |||| || ||| || Sbjct 2881 TGGAGCTTCATTGGGACAAAACAGCGACCACTCTCCATTATTCTGCACTCTTTGCATGAA 2940 Query 79953 GAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTC 80003 | |||||||| ||| | || ||| || ||||| || | | ||||||||| Sbjct 2941 CAAATCAGGAACCCATAATGC-ATAGAAAAGATCCCTTGCACGATGCTCCTC 2991 >seq1442 Length=121472 Score = 93.3 bits (102), Expect = 6e-14 Identities = 128/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 80137 AACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCA 80196 ||||| |||| || ||||| || || ||||| || || |||||| || ||| | || Sbjct 112513 AACATAGGAACTATCCCATTTGAGGTTCCATTTGTTCCTCGGATATAACTGCCAGTAGCT 112454 Query 80197 CGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGT 80256 |||||||| || ||| | ||| |||||||| || ||| || | ||| ||| Sbjct 112453 CGAATATTGTGAACTGAGACACCAATTCCCCCAGCAGATTTGCTTATGACTGCACATTCC 112394 Query 80257 TTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCT 80315 || | ||||||||||| ||||| ||||| ||||| ||||| || || |||||||| Sbjct 112393 TTCAGAGTATCATAGATTCCCTCAATGCTGTCATCTTTCATGCAAATGAGGAAACAGCT 112335 Score = 87.8 bits (96), Expect = 3e-12 Identities = 124/172 (72%), Gaps = 2/172 (1%) Strand=Plus/Minus Query 79833 TTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCC 79892 ||||||||| ||| |||||| ||| || ||||| || ||||| || | || || Sbjct 113319 TTCTCTTTCATATCTTGTATACAATTTCTCAAACTCCTCACCCCAGCAGTCAGCCAACCC 113260 Query 79893 AGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAA 79952 ||| ||| | ||||| | || |||||||||||| | || || |||| || ||| || Sbjct 113259 TGGAGCTTCATTGGGACAAAACAGCGACCACTCTCCGTTATTCTGCACTCTTTGCATGAA 113200 Query 79953 GAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTC 80003 | |||||||| ||| || || ||| || ||||| || | | ||||||||| Sbjct 113199 TAAATCAGGAACCCATAGTGC-ATAGAAAAGATCCCTTGCACGATGCTCCTC 113149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718144153428120