Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq3499 95.1 9e-15 seq654 89.7 4e-13 seq1091 86.0 5e-12 >seq3499 Length=58236 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || |||||||| | | || | ||| | ||| |||||| || | |||||||| | | Sbjct 8753 CCACCACGCAGACGCAGGACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAATCAGCC 8812 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || | | | || || | || ||||| ||||| || | |||||| || || | ||| Sbjct 8813 AGGGTCCTTCCATCCTCGAGCTGCTTGCCAGCAAAGATAAGTCGCTGCTGGTCCGGCGGA 8872 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||| || || |||| | | ||||| || ||| |||||| | ||| || Sbjct 8873 ATACCTTCCTTGTCCTGGATCTTCGCCTTGACATTGTCAATTGTGTCAGAGGACTCCACC 8932 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || ||||| || ||||| || || ||||||||||| ||||| Sbjct 8933 TCCAGAGTGATAGTCTTGCCGGTCAGGGTCTTCACAAAAATCTGCAT 8979 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || |||||||| | | || | ||| | ||| |||||| || | |||||||| | | Sbjct 10257 CCACCACGCAGACGCAGGACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAATCAGCC 10316 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || | | | || || | || ||||| ||||| || | |||||| || || | ||| Sbjct 10317 AGGGTCCTTCCATCCTCGAGCTGCTTGCCAGCAAAGATAAGTCGCTGCTGGTCCGGCGGA 10376 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||| || || |||| | ||||| || ||| |||||| | ||| || Sbjct 10377 ATACCTTCCTTGTCCTGGATCTTTGCCTTGACATTGTCAATTGTGTCAGAGGACTCCACC 10436 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || ||||| || ||||| || || ||||||||||| ||||| Sbjct 10437 TCGAGAGTGATAGTCTTGCCGGTCAGGGTCTTCACAAAAATCTGCAT 10483 >seq654 Length=182673 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || |||||||| | | || | ||| | ||| |||||| || | |||||||| | | Sbjct 10389 CCACCACGCAGACGCAGGACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAATCAGCC 10448 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || | | | || || | || ||||| ||||| || | |||||| || || | ||| Sbjct 10449 AGGGTCCTTCCATCCTCGAGCTGCTTGCCAGCAAAGATAAGTCGCTGCTGGTCCGGCGGA 10508 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||| || || |||| | ||||| || ||| |||||| | ||| || Sbjct 10509 ATACCTTCCTTGTCCTGGATCTTTGCCTTGACATTGTCAATTGTGTCAGAGGACTCCACC 10568 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || ||||| || ||||| || || ||||||||||| ||||| Sbjct 10569 TCGAGAGTGATAGTCTTGCCGGTCAGGGTCTTCACAAAAATCTGCAT 10615 >seq1091 Length=144125 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 42907 TGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGT 42966 |||| ||| ||||||||| | ||||| || | ||||||||| | || || | ||| Sbjct 81437 TGGAGAGTAGACTCCTTTTGGATGTTGTAGTCAGCCAATGTACGACCATCCTCGAGTTGC 81378 Query 42967 TTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAAC 43026 ||||||||||| || | | ||| || || | || | || || || || |||| Sbjct 81377 TTGCCGGCAAAGATGAGCCTCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTG 81318 Query 43027 TCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGACGTCTACCGTTATAGTTTTTCCGGT 43085 | ||||| || ||| ||||| ||| |||||| || | ||| || || || ||||| Sbjct 81317 GCCTTGACGTTGTCAATAGTGTC-AGAGCTCTCGACCTCCAACGTGATTGTCTTGCCGGT 81259 Query 43086 TAGAGTTTTCACAAAAATTTGCAT 43109 || || |||||||| |||||||| Sbjct 81258 CAGGGTCTTCACAAAGATTTGCAT 81235 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| || || | | ||||| || | ||| |||||| || | ||||||||| | | Sbjct 81917 CCTCCTCGAAGGCGGAGGACCAAGTGAAGAGTCGACTCCTTCTGGATATTGTAATCAGCC 81858 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 ||||| ||| | || |||| || || || ||||| || | || ||| || || | || Sbjct 81857 AATGTGCGTCCATCCTCCAGCTGCTTTCCAGCAAAGATGAGTCTCTGCTGGTCAGGTGGG 81798 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGAC 43061 | || || || || |||| | | || || | ||| |||||| ||| ||| || Sbjct 81797 ATGCCCTCCTTATCCTGGATCTTCGCCTTCACATTATCAATTGTGTCAG-AGCTCTCAAC 81739 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | ||||| || ||||| || || || ||||||||||| ||||| Sbjct 81738 CTCAAGAGTTATGGTCTTTCCAGTAAGGGTCTTCACAAAAATCTGCAT 81691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381305072621214