Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq3014 96.9 5e-15 seq1442 89.7 7e-13 seq837 87.8 2e-12 seq737 87.8 2e-12 >seq3014 Length=68818 Score = 96.9 bits (106), Expect = 5e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 72171 TTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAAT 72230 |||| ||| || ||||| | || | || || | ||| | || | |||||| |||| Sbjct 3584 TTTGCCTCCGCCTTGATCAACATAACGTGCAGTATCATTGAAGACACGCAACATAGGAAC 3643 Query 72231 AATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCT 72290 || ||||| || | ||||| || || |||||| || ||| | || ||||||||| Sbjct 3644 TATCCCATTTGAGGTTCCATTTGTTCCTCGGATATAACTGCCAGTAGCTCGAATATTGTG 3703 Query 72291 AATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATC 72350 || ||| | ||| |||||||| || ||| || | ||| ||| || | ||||| Sbjct 3704 AACTGAGACACCAATTCCCCCAGCAGATTTGCTTATGACTGCACATTCCTTCAGAGTATC 3763 Query 72351 ATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 72398 |||||| ||||| || || ||||| ||||| || || |||||||| Sbjct 3764 ATAGATTCCCTCAATGCTGTCATCTTTCATGCAAATGAGGAAACAGCT 3811 Score = 95.1 bits (104), Expect = 2e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 72417 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 72476 ||| || ||||| || | || || ||||| || |||||||| | ||||| |||| Sbjct 3913 AGTGCCGGCATTGAAAAGTGTTGGTGAAGCATGTGTAAACCAGCGCTGAGACATCAGATG 3972 Query 72477 GTACGTCTCAATAGCTGATTCTATATCC-CATTGATGTATTCCTACCGCGACACGCATTA 72535 ||| || | ||||| ||||| || || | ||| ||||| || || | || | ||||| Sbjct 3973 GTATGTTTTGATAGCGGATTCAATGTCATCCTTG-TGTATACCCACTGAAACTCTCATTA 4031 Query 72536 ACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCA 72595 ||| ||||| ||||||||||| | ||| | | ||||| | ||| || | |||| Sbjct 4032 GCATGTGCTGTGGTCTTTCAACAACCTTCCCACCAAGCTTCAAGAGGTAAGACCTCTCCA 4091 Query 72596 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 72644 ||| || || ||||| |||| || ||||| | ||||||||||| Sbjct 4092 GAGTCTTGAATCCAAAGTAGTCATAGTCGAAGTCCCTATCGTAAATAAT 4140 Score = 86.0 bits (94), Expect = 8e-12 Identities = 126/173 (73%), Gaps = 4/173 (2%) Strand=Plus/Plus Query 71916 TTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGT-CTAATC 71974 ||||||||| ||| |||||| ||| || ||||| || ||||| ||| | | || | Sbjct 2821 TTCTCTTTCATATCTTGTATACAATTTCTCAAACTCCTCACCCCA-GCAGTCAGCCAACC 2879 Query 71975 CAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAA 72034 | ||| |||||| ||||| | || ||||||||||||| || | |||| || ||| | Sbjct 2880 CTGGAGCTTCATTGGGACAAAACAGCGACCACTCTCCATTATTCTGCACTCTTTGCATGA 2939 Query 72035 AGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTC 72086 | | |||||||| ||| | || ||| || ||||| || | | ||||||||| Sbjct 2940 ACAAATCAGGAACCCATAATGC-ATAGAAAAGATCCCTTGCACGATGCTCCTC 2991 >seq1442 Length=121472 Score = 89.7 bits (98), Expect = 7e-13 Identities = 127/179 (71%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 72220 AACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCA 72279 ||||| |||| || ||||| || | ||||| || || |||||| || ||| | || Sbjct 112513 AACATAGGAACTATCCCATTTGAGGTTCCATTTGTTCCTCGGATATAACTGCCAGTAGCT 112454 Query 72280 CGAATATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGT 72339 ||||||||| || ||| | ||| |||||||| || ||| || | ||| ||| Sbjct 112453 CGAATATTGTGAACTGAGACACCAATTCCCCCAGCAGATTTGCTTATGACTGCACATTCC 112394 Query 72340 TTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 72398 || | ||||||||||| ||||| || || ||||| ||||| || || |||||||| Sbjct 112393 TTCAGAGTATCATAGATTCCCTCAATGCTGTCATCTTTCATGCAAATGAGGAAACAGCT 112335 Score = 86.0 bits (94), Expect = 8e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 72417 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 72476 ||| || ||||| || | || || ||||| || |||||||| | ||||| || | Sbjct 112234 AGTGCCGGCATTGAAAAGAGTTGGTGAAGCATGTGTAAACCAGCGCTGAGACATCAGGTG 112175 Query 72477 GTACGTCTCAATAGCTGATTCTATATCC-CATTGATGTATTCCTACCGCGACACGCATTA 72535 ||| || | ||||| | ||| || || | ||| ||||| || || | || | ||||| Sbjct 112174 GTATGTTTTGATAGCGGCTTCAATGTCATCCTTG-TGTATACCCACTGAAACTCTCATTA 112116 Query 72536 ACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCA 72595 ||||||||| ||||||||||| | ||| | | ||||| | ||| || | |||| Sbjct 112115 GCATATGCTGTGGTCTTTCAACAACCTTCCCACCAAGCTTCAAGAGGTAAGACCTCTCCA 112056 Query 72596 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 72644 ||| || || ||||| |||| || ||||| | |||||||| || Sbjct 112055 GAGTCTTGAACCCAAAGTAGTCATAGTCGAAGTCCCTATCGTAAATGAT 112007 Score = 86.0 bits (94), Expect = 8e-12 Identities = 126/173 (73%), Gaps = 4/173 (2%) Strand=Plus/Minus Query 71916 TTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGT-CTAATC 71974 ||||||||| ||| |||||| ||| || ||||| || ||||| ||| | | || | Sbjct 113319 TTCTCTTTCATATCTTGTATACAATTTCTCAAACTCCTCACCCCA-GCAGTCAGCCAACC 113261 Query 71975 CAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAA 72034 | ||| |||||| ||||| | || ||||||||||| | || | |||| || ||| | Sbjct 113260 CTGGAGCTTCATTGGGACAAAACAGCGACCACTCTCCGTTATTCTGCACTCTTTGCATGA 113201 Query 72035 AGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTC 72086 | | |||||||| ||| || || ||| || ||||| || | | ||||||||| Sbjct 113200 ATAAATCAGGAACCCATAGTGC-ATAGAAAAGATCCCTTGCACGATGCTCCTC 113149 >seq837 Length=163444 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/139 (76%), Gaps = 8/139 (6%) Strand=Plus/Plus Query 71490 ATCAAATGGATAATTTAAG-AGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGA 71548 ||||||||| | | ||| |||||||| | ||||| || ||||||||||| || || | Sbjct 143076 ATCAAATGGC-ATTCCAAGTAGAATAAAAGTATCTGCCAAACCTTGAACGCCTATCCCAA 143134 Query 71549 TAGGTCTGTGTCTCTTATTAGA---AATTTCAGCTTCTGGAATAGGATAATAATTAATAT 71605 | || ||||| ||| |||| || || ||| ||| |||||| ||||||||||||| Sbjct 143135 TTGGCCTGTGCCTCATATTTGACTTCTTTGCAGTTTC---AATAGGGTAATAATTAATAT 143191 Query 71606 CTATAATTTTATTGAGATT 71624 | || ||||| || ||||| Sbjct 143192 CAATGATTTTGTTCAGATT 143210 >seq737 Length=174138 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/139 (76%), Gaps = 8/139 (6%) Strand=Plus/Minus Query 71490 ATCAAATGGATAATTTAAG-AGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGA 71548 ||||||||| | | ||| ||||| || | ||||| || ||||||||||| || || | Sbjct 55650 ATCAAATGGC-ATTCCAAGTAGAATGAAAGTATCTGCCAAACCTTGAACGCCTATCCCAA 55592 Query 71549 TAGGTCTGTGTCTCTTATTAGAAATTT---CAGCTTCTGGAATAGGATAATAATTAATAT 71605 |||| ||||| ||| |||| || ||| ||| ||| |||||| |||||||| |||| Sbjct 55591 TAGGCCTGTGCCTCATATTTGACTTTTTGGCAGTTTC---AATAGGGTAATAATTGATAT 55535 Query 71606 CTATAATTTTATTGAGATT 71624 | || ||||| || ||||| Sbjct 55534 CAATGATTTTGTTCAGATT 55516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671022732181080