Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq2233 100 3e-16 seq159 96.9 4e-15 seq737 93.3 4e-14 seq837 91.5 1e-13 >seq2233 Length=91068 Score = 100 bits (110), Expect = 3e-16 Identities = 94/117 (80%), Gaps = 2/117 (2%) Strand=Plus/Minus Query 142976 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC-GCTCATTGTGCTCGAGTCTTC 143034 |||||||||| ||| || ||||| || ||||||||||| ||| | ||| ||| ||||| Sbjct 79825 ACTAAATGAAGTGTCGACTCTTTCTGAATGTTGTAATCAGCT-AATGTCCTCCCATCTTC 79767 Query 143035 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 143091 | ||| ||||||||| | ||||| | |||||| || ||||| |||||||| ||||| Sbjct 79766 CAATTGCTTACCAGCAAAAATCAGCCTTTGCTGGTCTGGAGGAATGCCTTCCTTGTC 79710 >seq159 Length=296457 Score = 96.9 bits (106), Expect = 4e-15 Identities = 93/117 (79%), Gaps = 2/117 (2%) Strand=Plus/Plus Query 142976 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC-GCTCATTGTGCTCGAGTCTTC 143034 || ||||||| ||| || ||||| || ||||||||||| ||| | ||| ||| ||||| Sbjct 19305 ACCAAATGAAGTGTCGACTCTTTCTGAATGTTGTAATCAGCT-AATGTCCTCCCATCTTC 19363 Query 143035 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 143091 | ||| ||||||||| | ||||| | |||||| || ||||| |||||||| ||||| Sbjct 19364 CAATTGCTTACCAGCAAAAATCAGCCTTTGCTGGTCTGGAGGAATGCCTTCCTTGTC 19420 >seq737 Length=174138 Score = 93.3 bits (102), Expect = 4e-14 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 156877 ATCGGCCAAACCTTGAATGCCAATGCCGATGGGACGATGGCGCATATTAGAtttttttGC 156936 ||| ||||||||||||| ||| || || || || | || | |||||| || ||||| || Sbjct 55620 ATCTGCCAAACCTTGAACGCCTATCCCAATAGGCCTGTGCCTCATATTTGACTTTTTGGC 55561 Query 156937 AGTTTCAATAGGGTAGAAATTGCGATCAATAATTTTATTCA 156977 ||||||||||||||| ||||| |||||| ||||| |||| Sbjct 55560 AGTTTCAATAGGGTAATAATTGATATCAATGATTTTGTTCA 55520 >seq837 Length=163444 Score = 91.5 bits (100), Expect = 1e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 156868 AACAAATGCATCGGCCAAACCTTGAATGCCAATGCCGATGGGACGATGGCGCATATTAGA 156927 || ||| | ||| ||||||||||||| ||| || || || || | || | |||||| || Sbjct 143097 AATAAAAGTATCTGCCAAACCTTGAACGCCTATCCCAATTGGCCTGTGCCTCATATTTGA 143156 Query 156928 tttttttGCAGTTTCAATAGGGTAGAAATTGCGATCAATAATTTTATTCA 156977 || |||||||||||||||||||| |||| |||||| ||||| |||| Sbjct 143157 CTTCTTTGCAGTTTCAATAGGGTAATAATTAATATCAATGATTTTGTTCA 143206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506926413988560