Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq3634 167 3e-36 seq1443 167 3e-36 >seq3634 Length=55208 Score = 167 bits (184), Expect = 3e-36 Identities = 247/343 (72%), Gaps = 9/343 (3%) Strand=Plus/Minus Query 125234 CTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGAT 125293 ||| ||||| ||||| ||| || |||||| | |||||||| |||||||| ||| | Sbjct 872 CTTCTACGGCTTCCAGATCGCCATCGAGAACATCCACTCGGAGATGTACTCGCTGCTGCT 813 Query 125294 TGACATGTACATTCGCGATCCGCAACGTAAAC-ACATGCTCTTTAACGCAATCGACACGG 125352 || | |||||| ||||| | || || || || ||||| ||| ||||| |||| Sbjct 812 GGAGACGTACATCCGCGA-CGGCGCCGAGAAGGACCGCCTCTTCCGCGCCATCGAGACGG 754 Query 125353 TGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGT-CT 125411 | || | | || ||||| | |||| || || |||||||| | || | || || Sbjct 753 TCCCCGCCGTCCGCCGCAAGGCCGAGTGGGCCATGCGCTGGATCGACGGCGGCGAGCGCT 694 Query 125412 TCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGG-TAG 125470 ||| |||| | || || || |||||| ||| |||||||||||||| ||||| | Sbjct 693 TCG----CCGAGCGCCTAGTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCC 638 Query 125471 TTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAA 125530 || |||| ||||||| ||||||||||||||||| |||||||| || || || | || Sbjct 637 TTCTGCG-CCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGCCTCACCTTCTCCAA 579 Query 125531 CGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCC 125573 |||| | || || || ||||||||||| ||||| ||||| ||| Sbjct 578 CGAGCTCATCTCCCGCGACGAGGGCCTCCACTGCGACTTCGCC 536 >seq1443 Length=121453 Score = 167 bits (184), Expect = 3e-36 Identities = 247/343 (72%), Gaps = 9/343 (3%) Strand=Plus/Minus Query 125234 CTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGAT 125293 ||| ||||| ||||| ||| || |||||| | |||||||| |||||||| ||| | Sbjct 26004 CTTCTACGGCTTCCAGATCGCCATCGAGAACATCCACTCGGAGATGTACTCGCTGCTGCT 25945 Query 125294 TGACATGTACATTCGCGATCCGCAACGTAAAC-ACATGCTCTTTAACGCAATCGACACGG 125352 || | |||||| ||||| | || || || || ||||| ||| ||||| |||| Sbjct 25944 GGAGACGTACATCCGCGA-CGGCGCCGAGAAGGACCGCCTCTTCCGCGCCATCGAGACGG 25886 Query 125353 TGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGT-CT 125411 | || | | || ||||| | |||| || || |||||||| | || | || || Sbjct 25885 TCCCCGCCGTCCGCCGCAAGGCCGAGTGGGCCATGCGCTGGATCGACGGCGGCGAGCGCT 25826 Query 125412 TCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGG-TAG 125470 ||| |||| | || || || |||||| ||| |||||||||||||| ||||| | Sbjct 25825 TCG----CCGAGCGCCTAGTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCC 25770 Query 125471 TTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAA 125530 || |||| ||||||| ||||||||||||||||| |||||||| || || || | || Sbjct 25769 TTCTGCG-CCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGCCTCACCTTCTCCAA 25711 Query 125531 CGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCC 125573 |||| | || || || ||||||||||| ||||| ||||| ||| Sbjct 25710 CGAGCTCATCTCCCGCGACGAGGGCCTCCACTGCGACTTCGCC 25668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740930598439080