Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq2503 91.5 1e-13 seq663 91.5 1e-13 seq70 86.0 5e-12 seq1562 82.4 6e-11 >seq2503 Length=81757 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||| | ||| | || |||||||| || || ||||| ||||||| || | | ||||| Sbjct 18165 CACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGGGTACGGCCATCCTC 18106 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 |||||| || || ||| | ||||| | |||||| ||| ||| | |||||| ||||| Sbjct 18105 CAGCTGCTTGCCGGCAAAGATAAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTG 18046 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 || ||| || || | | | | || || || |||| || | ||| ||||| || Sbjct 18045 GATCTTCGCCTTCACATTGTCAATGGTGTCAGAAGACTCCACCTCCAGGGTGATGGTCTT 17986 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||| || | || |||||||| || ||||| Sbjct 17985 ACCAGTCAGGGTCTTGACAAAGATCTGCAT 17956 >seq663 Length=181307 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||| | || || ||||| || || ||||||||||||| || | | ||||| Sbjct 105822 CACCAGGTGGAGAGTGGATTCCTTCTGGATGTTGTAATCCGCCAGGGTACGGCCATCCTC 105881 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 |||||| || || ||| | ||||| | |||||| ||| ||| | |||||| ||||| Sbjct 105882 CAGCTGCTTGCCGGCAAAGATAAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTG 105941 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 || ||| || || | | | | || || || |||| || | ||| ||||| || Sbjct 105942 GATCTTCGCCTTCACATTGTCAATGGTGTCAGAAGACTCCACCTCCAGGGTGATGGTCTT 106001 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||| || | || ||||| || || ||||| Sbjct 106002 ACCAGTCAGGGTCTTGACGAAGATCTGCAT 106031 >seq70 Length=369686 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||| | |||||| || |||||||| || ||||||||||| || | || | ||||||| Sbjct 289912 CACAAGGTGCAAGGTGGACTCCTTCTGGATATTGTAATCTGCAAGGGTGCGGCCGTCCTC 289853 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 ||||| ||||| || | || || | |||||| ||| || | ||||| ||||| Sbjct 289852 AAGCTGCTTACCAGCGAAGATGAGGCGCTGCTGGTCCGGTGGAATACCCTCCTTGTCCTG 289793 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 ||| || || || | | | || || | |||| ||| | || ||||| || Sbjct 289792 AATCTTTGCCTTCACATTATCAATGGTGTCAGATGACTCCACTTCAAGCGTGATGGTCTT 289733 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || | ||| ||||||||||||||||| Sbjct 289732 TCCGGTCAGAGTCTTGACAAAAATTTGCAT 289703 >seq1562 Length=116030 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||| | || || ||||| || || ||||| ||||||| || | | ||||| Sbjct 82549 CACCAGGTGGAGAGTGGATTCCTTCTGGATGTTGTAGTCCGCCAGGGTACGGCCATCCTC 82608 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 |||||| || || ||| | ||||| | |||||| ||| ||| | |||||| ||||| Sbjct 82609 CAGCTGCTTGCCGGCAAAGATAAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTG 82668 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 || ||| || || | | | | || || || |||| || | ||| ||||| || Sbjct 82669 GATCTTCGCCTTCACATTGTCAATGGTGTCAGAAGACTCCACCTCCAGGGTGATGGTCTT 82728 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || | || ||||| || || ||||| Sbjct 82729 CCCAGTGAGCGTCTTGACGAAGATCTGCAT 82758 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414502654670902