Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq445 147 2e-30 seq5885 141 8e-29 seq2067 134 1e-26 seq99 134 1e-26 >seq445 Length=212115 Score = 147 bits (162), Expect = 2e-30 Identities = 180/244 (74%), Gaps = 4/244 (2%) Strand=Plus/Minus Query 5501 ACGCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCT 5560 ||||| ||||| ||||| ||||| |||| || | || |||| ||| ||||||| Sbjct 32665 ACGCCGGTGGATCCGAAGCCGCCCTCGCCCCTGACGGTGGCGTCGAGGTCGTCCACCTCG 32606 Query 5561 TCCACATCGGGGAACGCAGCGCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTTT 5620 |||| || || || | | |||| ||||| |||||| | |||||||| | | | Sbjct 32605 GCCACCTCCGGCGTGGCGACCCTCTCGATGATCATCTGCGCGACGCGGTCGCCGGGCCTC 32546 Query 5621 ACCTCGAAATCGTTGTGGCCGAA--GTTGAACAGCACCACGCCCACGTTGCCGCGGTAGT 5678 ||| |||| |||| || |||| |||||| |||||||| || ||| ||||||||||| Sbjct 32545 ACCGCGAAGTCGTCGT--CCGAGTGGTTGAAGAGCACCACTCCGACGGGGCCGCGGTAGT 32488 Query 5679 CGGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGG 5738 | ||||| | |||||| ||||||||||||||| |||||| | |||||| || || || | Sbjct 32487 CCGCGTCCACCACGCCGGCGCCCACGTCGATGCCGTGCTTCAGCGCCAGCCCCGACCGCG 32428 Query 5739 GAGC 5742 | || Sbjct 32427 GCGC 32424 >seq5885 Length=24594 Score = 141 bits (156), Expect = 8e-29 Identities = 179/244 (73%), Gaps = 4/244 (2%) Strand=Plus/Minus Query 5501 ACGCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCT 5560 ||||| ||||| ||||| ||||| |||| || | || | || ||| ||||||| Sbjct 15973 ACGCCGGTGGATCCGAAGCCGCCCTCGCCCCTGACGGTGGCATCGAGGTCGTCCACCTCG 15914 Query 5561 TCCACATCGGGGAACGCAGCGCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTTT 5620 |||| || || || | | |||| ||||| |||||| | |||||||| | | | Sbjct 15913 GCCACCTCCGGCGTGGCGACCCTCTCGATGATCATCTGCGCGACGCGGTCGCCGGGCCTC 15854 Query 5621 ACCTCGAAATCGTTGTGGCCGAA--GTTGAACAGCACCACGCCCACGTTGCCGCGGTAGT 5678 ||| |||| |||| || |||| |||||| |||||||| || ||| ||||||||||| Sbjct 15853 ACCGCGAAGTCGTCGT--CCGAGTGGTTGAAGAGCACCACTCCGACGGGGCCGCGGTAGT 15796 Query 5679 CGGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGG 5738 | ||||| | |||||| ||||||||||||||| |||||| | |||||| || || || | Sbjct 15795 CCGCGTCCACCACGCCGGCGCCCACGTCGATGCCGTGCTTCAGCGCCAGCCCAGACCGCG 15736 Query 5739 GAGC 5742 | || Sbjct 15735 GCGC 15732 >seq2067 Length=96128 Score = 134 bits (148), Expect = 1e-26 Identities = 174/236 (74%), Gaps = 6/236 (3%) Strand=Plus/Plus Query 5501 ACGCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCT 5560 ||||| ||||| ||||| || || |||| | | || |||||||| | ||||||| Sbjct 57565 ACGCCGGTGGATCCGAACCCACCCTCGCCGCGCACGGTGGCGTCCAGGTCCTCCACCTCC 57624 Query 5561 TCCACATCGGGGAACGC-AGCGCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTT 5619 | || || || ||| | | | || | ||||| |||||| || |||||||| | ||| Sbjct 57625 GCGACCTCCGGCGTCGCGATCAC-CTGGATGATCATCTGCGCGATGCGGTCGCCGGGCTT 57683 Query 5620 TACCTCGAAATCGTTGTGGCCGAA--GTTGAACAGCACCACGCCCACGTTGCCGCGGTAG 5677 || |||| || || |||| |||||| || | || |||| | |||||||||| Sbjct 57684 GACGGCGAAGTCCACGT--CCGAGTGGTTGAAGAGGATGACCCCCAGGGGGCCGCGGTAG 57741 Query 5678 TCGGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGA 5733 || ||||| |||||||||||||||||||||||| ||||||| | |||||| ||||| Sbjct 57742 TCCGCGTCGATCACGCCCGCGCCCACGTCGATGGAGTGCTTCAGCGCCAGCCCGGA 57797 >seq99 Length=342384 Score = 134 bits (148), Expect = 1e-26 Identities = 172/235 (73%), Gaps = 4/235 (2%) Strand=Plus/Minus Query 5501 ACGCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCT 5560 ||||| ||||| ||||| || || |||| | | || |||||||| | ||||||| Sbjct 100690 ACGCCGGTGGATCCGAACCCTCCCTCGCCGCGCACGGTGGCGTCCAGGTCCTCCACCTCC 100631 Query 5561 TCCACATCGGGGAACGCAGCGCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTTT 5620 | || || || |||| || | ||||| |||||| || |||||||| | ||| Sbjct 100630 GCGACCTCCGGCGTCGCAATCACCTGGATGATCATCTGCGCGATGCGGTCGCCGGGCTTG 100571 Query 5621 ACCTCGAAATCGTTGTGGCCGAA--GTTGAACAGCACCACGCCCACGTTGCCGCGGTAGT 5678 || |||| || || ||||| |||||| || | || |||||| |||||||||| Sbjct 100570 ACGGCGAAGTCCACGT--CCGAATGGTTGAAGAGGATGACCCCCACGGGCCCGCGGTAGT 100513 Query 5679 CGGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGA 5733 | ||||| |||||||| ||||||||||||||| ||||||| | |||||| ||||| Sbjct 100512 CCGCGTCGATCACGCCGGCGCCCACGTCGATGGAGTGCTTCAGCGCCAGCCCGGA 100458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429981635198696