Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= NC_006820.1 Length=196280 Score E Sequences producing significant alignments: (Bits) Value seq5025 122 1e-22 seq6788 116 5e-21 seq4399 111 2e-19 seq334 93.3 5e-14 >seq5025 Length=34140 Score = 122 bits (134), Expect = 1e-22 Identities = 225/329 (68%), Gaps = 6/329 (2%) Strand=Plus/Minus Query 137875 TGGATGACTGGATTAAACGAGATCGCTTTGTATTTGTGGGTTGGTCTGGACTACTACTTT 137934 |||| |||||| | | | || || || || ||||| || ||||| | ||| | || | Sbjct 14218 TGGACGACTGGTTACGAAGGGACCGTTTCGTTTTTGTAGGATGGTCCAGCCTATTGCTCT 14159 Query 137935 TTCCCACTGCTTATTTGGCCCTTGGTGGCTGGCTTACTGGCACAACGTTTGTTACAAGCT 137994 |||| ||||||||| || | || || ||| |||| || || || ||||| || | Sbjct 14158 TTCCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACTACTTTTGTAACTTCTT 14099 Query 137995 GGTACACCCACGGGTTGGCGTCTAGTT---ATCTTGAAGGCGCTAATTTCCTCACAGCAG 138051 |||| ||||| || || || ||||| || | ||||| |||||| | || |||| Sbjct 14098 GGTATACCCATGGATTAGC---TAGTTCCTATTTGGAAGGTTGCAATTTCTTAACGGCAG 14042 Query 138052 CTGTTTCGACTCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGT 138111 | ||||| || ||||| || | | | || ||| | | ||||| ||||| || || Sbjct 14041 CGGTTTCCACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGACCGGAAG 13982 Query 138112 CTCAAGGAGATATCGTCCGCTGGTTCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCC 138171 | ||||| ||| | || |||| ||| | || || || ||||||||||| || || | Sbjct 13981 CACAAGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTTGCTCTAC 13922 Query 138172 ACGGGGCCTTTAGTCTGATTGGATTCATG 138200 | ||||| ||| || || || |||||| Sbjct 13921 ATGGGGCTTTTGCACTAATAGGTTTCATG 13893 >seq6788 Length=15930 Score = 116 bits (128), Expect = 5e-21 Identities = 143/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 135374 TTCTGCGAGTGGGTTACCAGCACCGACAACCGCCTCTATGTGGGTTGGTTTGGAACGCTG 135433 |||||| | ||| | || |||||||| || || || || | || |||||||| || Sbjct 6666 TTCTGCAACTGGATAACTAGCACCGAAAATCGTCTTTACATCGGATGGTTTGGTGTTTTG 6607 Query 135434 ATGATTCCTACTCTTCTCG-CAGCTGCTATCTGCTTTATTGTTGCTTTCATCGCTGCACC 135492 ||||| ||||| ||| | | | || || | |||||| | || ||||||||||| || Sbjct 6606 ATGATCCCTAC-CTTATTGACCGCAACTTCCGTATTTATTATCGCCTTCATCGCTGCTCC 6548 Query 135493 TCCCGTCGATATTGACGGCATCCGCGAACCTGTTGCTGGTTCTCTAATGTACGGAAATAA 135552 ||| || |||||||| || || || || |||||| |||||||| || | || ||||| || Sbjct 6547 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAA 6488 Query 135553 CATCATCTCTGGT 135565 || ||||||||| Sbjct 6487 TATTATCTCTGGT 6475 >seq4399 Length=42927 Score = 111 bits (122), Expect = 2e-19 Identities = 84/99 (85%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 138553 ATTCAATGGTTACTGCTAACCGTTACTGGTCGCAAATCTTTGGAATTGCTTTTAGTAATA 138612 |||||||||||||||||||||| | ||||| ||||||||||| |||||||| |||| Sbjct 11125 ATTCAATGGTTACTGCTAACCGCTTTTGGTCCCAAATCTTTGGTGTTGCTTTTTCCAATA 11184 Query 138613 AGCGTTGGCTTCACTTCTTTATGCTCTTTGTTCCCGTCA 138651 | |||||| | || ||||||||||| ||||| ||||||| Sbjct 11185 AACGTTGGTTACATTTCTTTATGCTATTTGTACCCGTCA 11223 >seq334 Length=235784 Score = 93.3 bits (102), Expect = 5e-14 Identities = 89/113 (79%), Gaps = 2/113 (2%) Strand=Plus/Plus Query 138714 TTCGTATCGCAAGAAATTCGTGCAGCAGAAGATCCTGAATTCGAGACCTTCTACACCAAG 138773 ||||| || || ||||| |||||||| |||||||||||||| ||||| |||||||| | Sbjct 148219 TTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACAC--AA 148276 Query 138774 AACATTCTTCTGAATGAAGGTCTGCGTGCCTGGATGGCTCCTGTGGATCAACC 138826 || |||||| | || || ||| | ||||| || ||||| || |||||| || Sbjct 148277 AAAATTCTTTTAAACGAGGGTATTCGTGCGTGTATGGCAGCTCAGGATCAGCC 148329 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627859024003200