Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= NC_006945.1 Length=14844 Score E Sequences producing significant alignments: (Bits) Value seq13765 930 0.0 seq13747 563 8e-157 seq13745 316 2e-82 >seq13765 Length=656 Score = 930 bits (1030), Expect = 0.0 Identities = 611/677 (90%), Gaps = 22/677 (3%) Strand=Plus/Minus Query 11523 GGCAAAGAGCGGAGCAAAGAAAGTTACAAAGTCATCCTCACGATCTAGAGGATATAAAAA 11582 ||||||||| ||||||||||||||||||||||| ||| ||||||||| ||||||||||| Sbjct 656 GGCAAAGAGTGGAGCAAAGAAAGTTACAAAGTCTTCCCCACGATCTAAGGGATATAAAAA 597 Query 11583 AGTAAAACCGAAAGGCGGTGCTACGAATGGCGGAACTACAGGGACTCAAACTAAACGACA 11642 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 596 AGTAAAACCGAAAGGCGGTGCTACGAATGGCGGAACTACAGGGACTCAAACTAAACGACA 537 Query 11643 AGTTGAAGCAAGTATATGACAAGACGTTATCCCTTGGTTTGCGATTCACAAGCGGATACC 11702 | |||||||| |||||||||||||||||||||||||||||||||||| Sbjct 536 A--------------ATGACAAGGCGTTATCCCTTGGTTTGCGATTCACAAGCGGATACC 491 Query 11703 GCCCCGGTTCTACCGGACCAAGCGGGAGACCGGATAGCCATTCCCAAGGCATGGCTATGG 11762 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 490 GCCCCGGTTCTACCGGACCAAGTGGGAGACCGGATAGCCATTCCCAAGGCATGGCTATGG 431 Query 11763 ACTTCGCGGGTTCGAAAGATAAAATGGACGAATTTGCGAAATGGGCGAAAACGTCACCGC 11822 ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 430 ACTTCGCGGGTTCAAAAGATAAAATGGACGAATTTGCAAAATGGGCGAAAACGTCACCGC 371 Query 11823 TATTTACGGAAGTGTTATGGCAAACTGCTGGACACTACGATCATGTACACGTCGGGTGGC 11882 ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| Sbjct 370 TATTTACGGAAGTGTTATGGCAAACGGCTGGGCACTACGATCATGTACACGTCGGGTGGC 311 Query 11883 AAGAGGGAAAACACCAAGCCGGAAAGATGTACGTAGGCGATAAAACATTGATCGACAGGC 11942 |||||||||||||||||||||||||||| ||||||||||||||||| ||||||| Sbjct 310 AAGAGGGAAAACACCAAGCCGGAAAGAT-------GGCGATAAAACATTGATAGACAGGC 258 Query 11943 CCACGGGTGACGGTGGCGGTGCCCTAAGCACGGGGACGGCTTCCCCAAATTCCGACAAAG 12002 | |||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||| Sbjct 257 CAACGGGTGACGGTGGCGGTGCGCTAAGTACGGGTACGGCTTCCCCAAATTCCGACAAAG 198 Query 12003 GATTTATCACAAGTGCATTTGTTGGAATCGTTCGTGCTGTTATGATTCTTGTCTTTCTGA 12062 ||||||| |||||||||||| | |||||| | || || |||||||| | || ||| | | Sbjct 197 GATTTATTACAAGTGCATTTATGGGAATCATACGCGCCGTTATGATCTTGGTGTTTTTAA 138 Query 12063 TCGTAGCTGTATATTTCTTCTTCCAAGCATTCCCGGATATAAAAGTAAAAGTATTTTAAG 12122 | ||||||||||||||||||||||||| ||||| ||||| ||||||||| || | |||| Sbjct 137 TTATAGCTGTATATTTCTTCTTCCAAGCCTTCCCAGATATGAAAGTAAAACTACTATAAG 78 Query 12123 GAGTTGAAAAACATGTTAAAGGATAATACATGGCGTGAGGTCACGCTCACACTACCGCCT 12182 |||||| | |||||| |||||||||||||||||||||||||| |||||| |||||||| Sbjct 77 GAGTTG-AGAACATGACGAAGGATAATACATGGCGTGAGGTCACACTCACATTACCGCCT 19 Query 12183 AAAATGGCGTATACACA 12199 | ||||||||||||||| Sbjct 18 AGAATGGCGTATACACA 2 >seq13747 Length=1152 Score = 563 bits (624), Expect = 8e-157 Identities = 381/433 (88%), Gaps = 28/433 (6%) Strand=Plus/Plus Query 5666 CTATGTGAACCGATAGAGAATATGTTAGCAAAAACCGCAGCACTCGAAAAAGTCGGGGAA 5725 |||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||| Sbjct 745 CTATGTGAACCGATAGAGAACATGTTAGCAAAAACGTCAGCACTTGAAAAAGTCGGGGAA 804 Query 5726 AATAGTGACGCGATTGCACTTGCTATCGCATGCTTTACAATCTTTGTACCAAAATTCTTA 5785 |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 805 AATAGTGACGCGATTGCACTTGCTATCGCATGTTTTACAATCTTTGTACCAAAATTCTTG 864 Query 5786 ATGTGGAATGCCACAAGAAAACAGAAGAAAGCGCAGGTGGTAACAAATTATGCTAAATCA 5845 ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| || Sbjct 865 ATGTGGAATGCCACACGAAAACAAAAGAAAGCGCAGGTGGTAACAAATTATGCTAAACCA 924 Query 5846 ATTCAGCCTACCGGAAACACCGGGGCAAACAAAACAGGAACGACTGGAGCAAGTAGCGGA 5905 ||||| |||||||||||| |||||| |||||||||| || ||||||| ||||||||||| Sbjct 925 ATTCAACCTACCGGAAACGCCGGGGGAAACAAAACAAGAGAGACTGGAACAAGTAGCGGA 984 Query 5906 CCAAGTGTTGGAAAACCTTCCACTTCCAGTCAAGCTTTTAGCGGGGAACTCAATCAACTC 5965 ||||||| | || ||| |||||||||||||||| Sbjct 985 CCAAGTGCTAGA-------CCA---------------------TGGAACTCAATCAACTC 1016 Query 5966 ATTCCGGCAAGCGCTCCATTTTGAGGACTTTGACGAACAAATCGACAATGGACTTGAAAA 6025 |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| Sbjct 1017 ATTCCGGCAAGCGCTCCATTTTGAGGACTTTGACGAGCAAATCGACAATGGTCTTGAAAA 1076 Query 6026 GCTGAAAGAAGTGATTGACTATGTCCAATACGGTACTTATCCGGGCCAGTAGGTGTATCT 6085 ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| Sbjct 1077 GCTGAAAGAAGTGATTGACTATGTCCAATACGGTACTTATCCGAGCGAGTAGGTGTATCT 1136 Query 6086 ATTCTATTCCGCT 6098 ||||||| ||||| Sbjct 1137 ATTCTATACCGCT 1149 Score = 374 bits (414), Expect = 8e-100 Identities = 233/252 (92%), Gaps = 11/252 (4%) Strand=Plus/Plus Query 4437 AGTCGAATGTACGTAAGTCATAAGACAGCACATCGCTATTTAATGCAATTGGAAAGTAAA 4496 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 AGTCGAATGTACGTAAGTCATAAGACAGCACATCGCTATTTAATGCAATTGGAAAGTAAA 60 Query 4497 GGACGAATTAGGAGAGTGCATCAAAGACCTAGAGCCATCCAGTTGTTATAAGGAGGGGAA 4556 ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| || Sbjct 61 GGACGTATTAGGAGAGTACATCAAAGACCTAGAGCCATCCAGTTGTTATAAGGAGGGAAA 120 Query 4557 AGGTATGCGTGACAAATTGCTCGACTTTATCATCGAACTATCACAATCTAGCAAA----- 4611 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 AGGTATGCGTGACAAATTGCTCGACTTTATCATCGAACTATCACAATCTAGCAAACAAGT 180 Query 4612 ------CAAGTCGTATGTCATCGACAGGTTAATGCAAGTAACAAAAGAAGACTACAAGGA 4665 ||||||||||||||| || || | ||||||||||||||||||||||||||||| Sbjct 181 CGTAAGCAAGTCGTATGTCATTGATAGACTGATGCAAGTAACAAAAGAAGACTACAAGGA 240 Query 4666 ACTAGAAAAGAA 4677 |||||||||||| Sbjct 241 ACTAGAAAAGAA 252 Score = 210 bits (232), Expect = 2e-50 Identities = 129/136 (95%), Gaps = 1/136 (1%) Strand=Plus/Plus Query 4691 GAAAAGGACTAGCAAAGTTGCTAGTCTTTTTTATTTGTCCAAAATGACACACGTGTGACG 4750 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 352 GAAAAGGACTAGCAAAGTTGCTAGTCTTTTTTATTTGTCCAAAATGACACACGCGTGACG 411 Query 4751 TTATGCGGAACAATTGTTCGTATTATAGTATACATATACAGAACAAACATTCGATAAGGA 4810 |||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||| Sbjct 412 TTATGCGGAACACTCGTTCGTATTATAGTATACATATAGCGAACAAACATTCGATAAGGA 471 Query 4811 GTGTGACAGA-TGGAT 4825 |||||||| | ||||| Sbjct 472 GTGTGACAAAGTGGAT 487 >seq13745 Length=323 Score = 316 bits (350), Expect = 2e-82 Identities = 274/347 (79%), Gaps = 26/347 (7%) Strand=Plus/Plus Query 8032 AATAAACAATACTTAAACTATGTGGAAAACGTAGCAACAACAGCCGGGAAGGACAATGAA 8091 |||||||||| ||||||| ||||||||||||||||||||||||||| || || |||||| Sbjct 3 AATAAACAATCATTAAACTTTGTGGAAAACGTAGCAACAACAGCCGGTAAAGATAATGAA 62 Query 8092 ATTCAATTTACAATCCCAATCCCTGTTAGTTTAAATGAACGTGACCCGGTCGGAATGGTT 8151 ||||||||||| | || |||||||| ||||||||||| |||||||| || || |||||| Sbjct 63 ATTCAATTTACCGTTCCGATCCCTGTAAGTTTAAATGACCGTGACCCTGTAGGTATGGTT 122 Query 8152 ATGCTGCAAAACAACACGGCTAACGTAAACTTATCAATTGCCGTTGACCAATTAGCAAAT 8211 ||| | |||||||| ||||||||||| || || || | ||||||||| Sbjct 123 ATGTTACAAAACAATACGGCTAACGTGAATCTAACAGTATCCGTTGACC----------- 171 Query 8212 GCATATAAATTAAATCCATCAAATAATGACCAAGTCATATTTAAATCTATGTCCATTACA 8271 | ||||||| ||||||||| | |||||||||||||||||||||| Sbjct 172 ---------------GCGTCAAATAGTGACCAAGTGACATTTAAATCTATGTCCATTACA 216 Query 8272 CCAGAGATCGAAACATTCTCTATTCCGTCGATTCCGGGCGGGCAACCGGATATGTCTGTA 8331 || | |||||||| || || ||||| || || |||||||| |||||||||||||||||| Sbjct 217 CCTGTTATCGAAACGTTTTCGATTCCTTCTATCCCGGGCGGTCAACCGGATATGTCTGTA 276 Query 8332 CTGAAACTCGTACAATCGAAATCGGACATTTTCAGTGGCGGTGGACA 8378 |||||||||||||||||||| |||||| | ||| ||||| ||||| Sbjct 277 CTGAAACTCGTACAATCGAAGTCGGACTTATTCTCGGGCGGAGGACA 323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 47374794073503