Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq1442 100 4e-16 seq3014 91.5 2e-13 >seq1442 Length=121472 Score = 100 bits (110), Expect = 4e-16 Identities = 127/172 (74%), Gaps = 2/172 (1%) Strand=Plus/Minus Query 63110 TTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCC 63169 ||||||||| ||| |||||||||| || ||||| || ||||| | |||| || Sbjct 113319 TTCTCTTTCATATCTTGTATACAATTTCTCAAACTCCTCACCCCAGCAGTCAGCCAACCC 113260 Query 63170 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAA 63229 ||| ||||| ||||| | || |||||||||||||| || || ||||| || ||| || Sbjct 113259 TGGAGCTTCATTGGGACAAAACAGCGACCACTCTCCGTTATTCTGCACTCTTTGCATGAA 113200 Query 63230 GAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTC 63280 | |||||||| ||| || || ||| || ||||| || | | ||| ||||| Sbjct 113199 TAAATCAGGAACCCATAGTGC-ATAGAAAAGATCCCTTGCACGATGCTCCTC 113149 >seq3014 Length=68818 Score = 91.5 bits (100), Expect = 2e-13 Identities = 125/172 (73%), Gaps = 2/172 (1%) Strand=Plus/Plus Query 63110 TTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCC 63169 ||||||||| ||| |||||||||| || ||||| || ||||| | |||| || Sbjct 2821 TTCTCTTTCATATCTTGTATACAATTTCTCAAACTCCTCACCCCAGCAGTCAGCCAACCC 2880 Query 63170 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAA 63229 ||| ||||| ||||| | || |||||||||||| | || || ||||| || ||| || Sbjct 2881 TGGAGCTTCATTGGGACAAAACAGCGACCACTCTCCATTATTCTGCACTCTTTGCATGAA 2940 Query 63230 GAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTC 63280 | |||||||| ||| | || ||| || ||||| || | | ||| ||||| Sbjct 2941 CAAATCAGGAACCCATAATGC-ATAGAAAAGATCCCTTGCACGATGCTCCTC 2991 Score = 86.0 bits (94), Expect = 8e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 63611 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63670 ||| || ||||| || | || || ||||| || |||||||| | ||| | |||| Sbjct 3913 AGTGCCGGCATTGAAAAGTGTTGGTGAAGCATGTGTAAACCAGCGCTGAGACATCAGATG 3972 Query 63671 GTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTA 63729 ||| || | ||||| || || || || | ||| || || || |||| || | ||||| Sbjct 3973 GTATGTTTTGATAGCGGATTCAATGTCATCCTTG-TGTATACCCACTGAAACTCTCATTA 4031 Query 63730 ACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCA 63789 ||||||||| ||||||||||| | ||| | ||||| | ||| || | |||| Sbjct 4032 GCATGTGCTGTGGTCTTTCAACAACCTTCCCACCAAGCTTCAAGAGGTAAGACCTCTCCA 4091 Query 63790 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63838 ||| || || ||||| |||| || ||||| | ||||||||||| Sbjct 4092 GAGTCTTGAATCCAAAGTAGTCATAGTCGAAGTCCCTATCGTAAATAAT 4140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622839095300280