Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq1442 98.7 3e-15 seq3014 89.7 1e-12 seq7324 87.8 5e-12 seq588 87.8 5e-12 >seq1442 Length=121472 Score = 98.7 bits (108), Expect = 3e-15 Identities = 156/220 (71%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 363622 ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCC 363681 ||||| || || ||| ||||| |||| ||| || || ||| | ||||| | || | Sbjct 112353 ATGAAAGATGACAGCATTGAGGGAATCTATGATACTCTGAAGGAATGTGCAGTCATAAGC 112412 Query 363682 AAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAACAGTTACAT 363740 || ||| || ||||||||||| || | |||||| |||| || || | |||||| || Sbjct 112413 AAATCTGCTGGGGGAATTGGTGTCTCAGTTCACAATATTCGAGCTACTG-GCAGTTATAT 112471 Query 363741 TCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATAC 363800 || || ||| ||| ||| |||||| | ||||| ||| | ||||| || || |||| Sbjct 112472 CCGAGGAACAAATGGAACCTCAAATGGGATAGTTCCTATGTTACGTGTCTTCAACGATAC 112531 Query 363801 TGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGG 363840 ||| | || ||||| || || ||||| || | |||||| Sbjct 112532 TGCACGTTATGTCGATCAAGGCGGAGGCAAAAG-AAAGGG 112570 >seq3014 Length=68818 Score = 89.7 bits (98), Expect = 1e-12 Identities = 154/220 (70%), Gaps = 3/220 (1%) Strand=Plus/Minus Query 363622 ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCC 363681 ||||| || || ||| ||||| |||| ||| || || ||| | ||||| | || | Sbjct 3793 ATGAAAGATGACAGCATTGAGGGAATCTATGATACTCTGAAGGAATGTGCAGTCATAAGC 3734 Query 363682 AAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAACAGTTACAT 363740 || ||| || ||||||||||| || | |||||| |||| || || | |||||| || Sbjct 3733 AAATCTGCTGGGGGAATTGGTGTCTCAGTTCACAATATTCGAGCTACTG-GCAGTTATAT 3675 Query 363741 TCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATAC 363800 || || ||| ||| ||| |||||| | ||||| ||| | ||||| || | |||| Sbjct 3674 CCGAGGAACAAATGGAACCTCAAATGGGATAGTTCCTATGTTGCGTGTCTTCAATGATAC 3615 Query 363801 TGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGG 363840 ||| | || || || || || ||||| || | |||||| Sbjct 3614 TGCACGTTATGTTGATCAAGGCGGAGGCAAAAG-AAAGGG 3576 >seq7324 Length=11911 Score = 87.8 bits (96), Expect = 5e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 111701 CCAGTTTTATGTACACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATAT 111760 |||||||||||| | ||||| ||| || |||||||||||||| || |||||||| || Sbjct 6793 CCAGTTTTATGTTGAGAACGGGGAGCTATCCTGCCAAATGTATCAACGCTCTGCTGACAT 6852 Query 111761 TGGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCA 111820 |||||||| ||||| || || |||||| || | || || || | | | || ||||| Sbjct 6853 GGGTCTTGGAGTTCCATTCAACATTGCATCGTATTCTCTTCTCACATACATGATTGCTCA 6912 Query 111821 T 111821 | Sbjct 6913 T 6913 Score = 87.8 bits (96), Expect = 5e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 111701 CCAGTTTTATGTACACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATAT 111760 |||||||||||| | ||||| ||| || |||||||||||||| || |||||||| || Sbjct 8735 CCAGTTTTATGTTGAGAACGGGGAGCTATCCTGCCAAATGTATCAACGCTCTGCTGACAT 8794 Query 111761 TGGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCA 111820 |||||||| ||||| || || |||||| || | || || || | | | || ||||| Sbjct 8795 GGGTCTTGGAGTTCCATTCAACATTGCATCGTATTCTCTTCTCACATACATGATTGCTCA 8854 Query 111821 T 111821 | Sbjct 8855 T 8855 >seq588 Length=189753 Score = 87.8 bits (96), Expect = 5e-12 Identities = 128/181 (71%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 371098 CCGCACCATGACTAATGATGGAATCCTTCTCCATCTCACCAATTCGGAGACCACCATCGC 371157 |||| ||||| ||| || ||||| ||||||| || |||| |||||||||||||| | Sbjct 166592 CCGCTCCATGTGCAATCATACAATCCCTCTCCATTTCTCCAAAGCGGAGACCACCATCAC 166533 Query 371158 GTGACCGTCCTTCTGTTGGCGCGCGTGTAAGTAGCTGTTGTGCACCGCGGTTGCGTGCAT 371217 |||| || || |||| |||| || || |||| ||| | ||| ||| | || || Sbjct 166532 GTGAACGCCCCTCTGCTGGCTGCCGAGTGAGTATCTGAACAGGACCACGGCCTCTTGAAT 166473 Query 371218 GTGACTTGTCAACTACCATGTGCTTGAGGCGCTGATAATAACACGGAGCAATAAAAATCA 371277 || ||| || | ||||||||||| || | || ||||| ||| | | ||||||| Sbjct 166472 GTATCTTATCGTCCACCATGTGCTTTAGTCTTTGGTAATATGTTGGACCCAGGAAAATCA 166413 Query 371278 T 371278 | Sbjct 166412 T 166412 Score = 84.2 bits (92), Expect = 6e-11 Identities = 126/179 (70%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 371100 GCACCATGACTAATGATGGAATCCTTCTCCATCTCACCAATTCGGAGACCACCATCGCGT 371159 || ||||| ||| || ||||| ||||||| || |||| |||||||||||||| ||| Sbjct 168029 GCTCCATGTGCAATCATACAATCCCTCTCCATTTCTCCAAAGCGGAGACCACCATCACGT 167970 Query 371160 GACCGTCCTTCTGTTGGCGCGCGTGTAAGTAGCTGTTGTGCACCGCGGTTGCGTGCATGT 371219 || || || |||| |||| || || |||| ||| | ||| ||| | || |||| Sbjct 167969 GAACGCCCCTCTGCTGGCTGCCGAGTGAGTATCTGAACAGGACCACGGCCTCTTGAATGT 167910 Query 371220 GACTTGTCAACTACCATGTGCTTGAGGCGCTGATAATAACACGGAGCAATAAAAATCAT 371278 ||| || | ||||||||||| || | || ||||| ||| | | |||||||| Sbjct 167909 ATCTTATCGTCCACCATGTGCTTTAGTCTTTGGTAATATGTTGGACCCAGGAAAATCAT 167851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303121764756506