Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= NC_007734.1 Length=40867 Score E Sequences producing significant alignments: (Bits) Value seq13854 230 6e-56 seq9885 105 2e-18 >seq13854 Length=613 Score = 230 bits (254), Expect = 6e-56 Identities = 436/635 (69%), Gaps = 33/635 (5%) Strand=Plus/Minus Query 21087 CAAGTGCCTTACATTAGTAATGAGATGATGTGGGAGCATTTAAAAGGATATGAGGTGGAG 21146 ||||| ||||| |||| ||||| | ||||||||| ||||| |||||||||| || Sbjct 612 CAAGTTCCTTATATTACGAATGAAAAGATGTGGGATGTACTAAAACAATATGAGGTGAAG 553 Query 21147 AAACATGAGGATGCAAACGCATATGCAAATCAACCGTCAAATGGCGATACTTGCGACGAT 21206 ||| |||| || || || ||||| |||||||| | |||||| ||| || | |||| Sbjct 552 AAAGATGAACATCCAGACACATATCAAAATCAACAGACAAATGATGATTCTGACCTCGAT 493 Query 21207 TAGAAAGCTACAGTTTGCAACGAGAAGGCATTTAATGAGTATTCATGAAATGGGTGGAAT 21266 ||||||||| | ||||| || | |||||||||||| ||| ||||| | ||||| || Sbjct 492 TAGAAAGCTGAAATTTGCTACACGTAGGCATTTAATGGCTATACATGATTTAGGTGGCAT 433 Query 21267 AAGAAATGCAAATCGAATTCTGAAAGATTT-ATCT-ATTTAT-ACAAGTAAGGTAGTTTA 21323 |||||||||||| || || | || ||||| | || |||| | | |||| ||| || Sbjct 432 AAGAAATGCAAACCGCATATTAAAGGATTTAAGCTCATTTGTGAATAGTA---CAGTGTA 376 Query 21324 CAATAAAGAGCATGTATATTATTTAAACCAATCAGGACATAAGTTGTTTGGCG---AAGG 21380 || ||||| ||||||||||| |||| || || || | |||| | | | Sbjct 375 TAAAAAAGAACATGTATATTACCTAAATAAAAATGGTAGAGAGCTATTTGATGATAATGA 316 Query 21381 GAAAGTTGTACATCATGGTAAAGTTA-CACACGCTCTTTTACGTAATGAAGCTTGGTTAA 21439 ||||||| ||| || || |||| | || |||| | | |||||||| ||| | Sbjct 315 GAAAGTTATACCCAATAGT-CGGTTAGCGCATAGTCTTATGAGAAATGAAGCATGGCTTT 257 Query 21440 ATTTATATTGTCCTGATGATTGGCAAGTAGAAACTGAAATTAAATATATAAAGGATAATA 21499 || | | |||||| ||||| | || ||| | |||| | | || | Sbjct 256 ATCTGTTTTGTCCCGATGACT-----NTATAAAGT-AAATGACCGA----------AAGA 213 Query 21500 AAAAGNNNNNAATAATTCCAGATGTGAAATTTCGTGATGAGGACAGAATACTTCATGCTG 21559 ||| | || ||| | ||||||||||| || ||||| ||| | ||| | | |||| Sbjct 212 AAACG------ATTATTTCTGATGTGAAATTCCGGGATGACGACGGGATATTAAACGCTG 159 Query 21560 TAGAAATAGATCGTACTCAGAAAATGATAGTGAACGATGaaaaattaaaaaaaTATGAGG 21619 ||||||| ||||||| |||| |||| | |||| ||||||| | || |||| | Sbjct 158 TAGAAATTGATCGTAAACAGACGATGAATATAAACGCTGAAAAAATGAATCGGTATGGTG 99 Query 21620 AGTTAACGCAGATTTATAAACAGAAGCATAACGGGAAAGTGCCAGTTATTCATTTCTTTA 21679 | || || | ||||||| | || ||||||||||||| || ||||||| || |||| Sbjct 98 AATTCACTGTGTATTATAAAAACAAATATAACGGGAAAGTCCCTATTATTCACTTTTTTA 39 Query 21680 CAATCACAAAATATAGAGAAAAGAAATTAGAAGAA 21714 || ||||| ||| || |||||| |||||| || Sbjct 38 CACTCACATCATACAGGCAAAAGACGTTAGAACAA 4 >seq9885 Length=2412 Score = 105 bits (116), Expect = 2e-18 Identities = 169/245 (69%), Gaps = 11/245 (4%) Strand=Plus/Plus Query 17829 AAGTGTCCGTATACAATGAAGCCTAAATATATCACTGTTCACAACACATATAATGATGCT 17888 |||||||| ||| | ||||| | | || || || || || ||||| ||||||||||| Sbjct 1825 AAGTGTCCTTATTCTATGAAAGCAGAGTACATTACAGTGCATAACACTTATAATGATGCG 1884 Query 17889 CCAGCTGAAAATGAAGTGAGTTACATGATTAGTAACAATAATGAGGTGTCGTTTCATATT 17948 || ||| | || || || | ||||||||| | || | || || || | Sbjct 1885 CCTGCTAAGAACGAGGTAAATTACATGATCGGAAA-----------TTTCATTCCACTTC 1933 Query 17949 GCAGTAGATGACAAGAAAGCGATTCAAGGTATTCCGTTGGAACGTAATGCATGGGCTTGC 18008 ||||||||||| | ||| ||||||||||||||| | || |||||||| ||| ||| Sbjct 1934 GCAGTAGATGATATCGAAGTTATTCAAGGTATTCCGGTTGATCGTAATGCTTGGCATTGT 1993 Query 18009 GGAGACGGCAATGGTTCGGGGAATCGTCAATCCATTTCTGTAGAAATCTGTTATTCAAAA 18068 || || || |||| || || || |||| || ||| ||||||||||| ||| | Sbjct 1994 GGTGATGGTGGTGGTAACGGAAACCGAAAATCTATCGGTGTTGAAATCTGTTACTCATTA 2053 Query 18069 TCAGG 18073 || || Sbjct 2054 TCTGG 2058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130631260497734