Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq1447 109 4e-19 seq1921 100 2e-16 seq70 87.8 1e-12 seq1091 86.0 4e-12 >seq1447 Length=121231 Score = 109 bits (120), Expect = 4e-19 Identities = 165/235 (70%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| |||| ||||| ||| | || || ||| |||||| || || |||||||| | | Sbjct 7023 CCACCCCTCAGACGCAGCACAAGGTGGAGTGTGGACTCCTTCTGGATGTTGTAATCGGCC 6964 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 || ||| | || |||| || || ||||||||||| || | || || || | | || Sbjct 6963 AATGTACGGCCATCTTCTAGCTGCTTGCCGGCAAATATGAGCCTCTGCTGGTCCGGGTGG 6904 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||| || || ||| ||| || ||| ||||| | || |||||| ||| ||||| Sbjct 6903 ATGCCCTCCTTATCCTGAATCTTAGCCTTAACATTGTCGATAGTATCAGAACTCTCAACC 6844 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTTTACA 38325 || | || || || || || || | ||| || ||||| |||||||| | || || Sbjct 6843 TCGAGAGTGATGGTCTTGCCGGTTAGGGTCTTAACGAAGATCTGCATCTGTTTCA 6789 >seq1921 Length=101655 Score = 100 bits (110), Expect = 2e-16 Identities = 81/97 (84%), Gaps = 7/97 (7%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||| ||||| |||||||||||||||||| ||||||||| |||| | |||||||| Sbjct 59927 AAGCTCGTTCTCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAATAGGAATCTCGT 59986 Query 25957 TAATCCTTTCATG--CGCGTCACTAATTAGATGACGA 25991 ||||| |||||| | |||||||||||||||||||| Sbjct 59987 TAATCTATTCATGCACACGTCACTAATTAGATGACGA 60023 >seq70 Length=369686 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38103 CGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCG 38162 |||| ||||| ||||| || |||||| ||||| || || || | || ||| | Sbjct 290145 CGCAGCACCAGGTGAAGGGTAGACTCCTTCTGAATGTTATAGTCCGCCAGCGTACGACCA 290086 Query 38163 TCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTG 38222 || || | || || |||||||| || ||||| ||||| || | |||| ||| || ||| Sbjct 290085 TCCTCCAGCTGCTTACCGGCAAAGATCAGGCGCTGTTGGTCCGGCGGGATGCCCTCCTTG 290026 Query 38223 TCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATA 38282 ||| || || ||||||||| | | ||||| ||||| || | || || Sbjct 290025 TCCTGGATCTTCGCCTTCACATTGTCAATGGTATCAGATGACTCAACCTCCAGGGTGATT 289966 Query 38283 GTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || || || |||| ||||||||||| ||||||||| Sbjct 289965 GTCTTGCCGGTCAGAGTTTTCACGAAAATCTGCATG 289930 Score = 84.2 bits (92), Expect = 1e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 38115 TGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGT 38174 ||||| ||| ||| || ||||||||||| |||| ||| || | || || | || Sbjct 289677 TGAAGGGTGGACTCTTTCTGAATATTGTAGTCAGCCAAGGTGCGACCATCCTCAAGCTGC 289618 Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234 || || ||||| || ||||| || || || | || | ||| || ||||| ||| || Sbjct 289617 TTCCCAGCAAAGATGAGGCGCTGCTGGTCTGGTGGAATGCCCTCCTTGTCTTGAATCTTC 289558 Query 38235 TGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTC 38294 ||||||||| | || || || | ||||| || | || || || || || ||| Sbjct 289557 GCCTTCACATTGTCGATCGTGTCCGAAGACTCAACCTCGAGCGTGATGGTCTTTCCAGTC 289498 Query 38295 AAGGTTTTCACGAATATCTGCATG 38318 ||||| ||||| || ||||||||| Sbjct 289497 AAGGTCTTCACAAAGATCTGCATG 289474 >seq1091 Length=144125 Score = 86.0 bits (94), Expect = 4e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 ||||| |||||||| |||||| || ||||||||||||| ||| ||| | || || Sbjct 81899 ACCAAGTGAAGAGTCGACTCCTTCTGGATATTGTAATCAGCCAATGTGCGTCCATCCTCC 81840 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228 | || ||||| ||||| || || | || || || | |||| ||| || || ||| Sbjct 81839 AGCTGCTTTCCAGCAAAGATGAGTCTCTGCTGGTCAGGTGGGATGCCCTCCTTATCCTGG 81780 Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288 || || ||||||||| | | || || || ||||| || | || || || || Sbjct 81779 ATCTTCGCCTTCACATTATCAATTGTGTCAGAGCTCTCAACCTCAAGAGTTATGGTCTTT 81720 Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || || | ||| ||||| || ||||||||| Sbjct 81719 CCAGTAAGGGTCTTCACAAAAATCTGCATG 81690 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334890527247773