Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= NC_008296.2 Length=177300 Score E Sequences producing significant alignments: (Bits) Value seq5025 120 3e-22 seq4399 102 9e-17 seq1910 84.2 2e-11 >seq5025 Length=34140 Score = 120 bits (132), Expect = 3e-22 Identities = 233/340 (69%), Gaps = 8/340 (2%) Strand=Plus/Minus Query 167300 TTTGATGTCCTGGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGA 167359 |||||| | |||| |||||| | | | ||||| || || ||||| || ||||| | Sbjct 14228 TTTGATATTATGGACGACTGGTTACGAAGGGACCGTTTCGTTTTTGTAGGATGGTCCAGC 14169 Query 167360 TTACTTCTTTTTCCCACTGCTTATCTGGCAATTGGTGGCTGGCTTACTGGCACGACGTTT 167419 || | || ||||| ||||||| | || | || || ||| |||| || || || ||| Sbjct 14168 CTATTGCTCTTTCCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACTACTTTT 14109 Query 167420 GTTACGAGCTGGTATACCCACGGGTTGGCGTCTAGTTAC--CTTG--AGGGTGCTAATTT 167475 || || ||||||||||| || || | |||||| | ||| ||| ||| ||||| Sbjct 14108 GTAACTTCTTGGTATACCCATGGATTAG---CTAGTTCCTATTTGGAAGGTTGC-AATTT 14053 Query 167476 TCTCACGGCAGCAGTGTCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTG 167535 | |||||||| || || || ||||| | | | | || ||| | | ||||| || Sbjct 14052 CTTAACGGCAGCGGTTTCCACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATG 13993 Query 167536 GGGTCCTGAGTCTCAGGGGGATTTCATCAGGTGGTGCCAGCTTGGGGGACTCTGGGCTTT 167595 ||| || || | || |||||||| | | ||||| || | || || || ||| |||| Sbjct 13992 GGGACCGGAAGCACAAGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTT 13933 Query 167596 TGTGGCGCTCCACGGAGCCTTTGCTCTCATAGGATTTATG 167635 ||| || || || || || ||||| || ||||| || ||| Sbjct 13932 TGTTGCTCTACATGGGGCTTTTGCACTAATAGGTTTCATG 13893 >seq4399 Length=42927 Score = 102 bits (112), Expect = 9e-17 Identities = 82/99 (83%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 167988 ATTCCATGGTCACTGCTAACCGATTCTGGTCTCAAATTTTTGGTATTGCTTTCAGCAATA 168047 |||| ||||| ||||||||||| || ||||| ||||| |||||| ||||||| ||||| Sbjct 11125 ATTCAATGGTTACTGCTAACCGCTTTTGGTCCCAAATCTTTGGTGTTGCTTTTTCCAATA 11184 Query 168048 AGCGTTGGTTGCACTTCTTTATGCTTTTCGTTCCTGTCA 168086 | |||||||| || ||||||||||| || || || |||| Sbjct 11185 AACGTTGGTTACATTTCTTTATGCTATTTGTACCCGTCA 11223 >seq1910 Length=102200 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/207 (70%), Gaps = 8/207 (4%) Strand=Plus/Plus Query 167300 TTTGATGTCCTGGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGA 167359 |||||| | |||| |||||| | | | ||||| || || ||||| || ||||| || Sbjct 8341 TTTGATATTATGGACGACTGGTTACGAAGGGACCGTTTCGTTTTTGTAGGATGGTCCGGC 8400 Query 167360 TTACTTCTTTTTCCCACTGCTTATCTGGCAATTGGTGGCTGGCTTACTGGCACGACGTTT 167419 || | || ||||| ||||||| | || | || || ||| |||| || || || ||| Sbjct 8401 CTATTACTCTTTCCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACTACTTTT 8460 Query 167420 GTTACGAGCTGGTATACCCACGGGTTGGCGTCTAGTTAC--CTTG--AGGGTGCTAATTT 167475 || || ||||||||||| || || | |||||| | ||| ||| ||| ||||| Sbjct 8461 GTAACTTCTTGGTATACCCATGGATTAG---CTAGTTCCTATTTGGAAGGTTGC-AATTT 8516 Query 167476 TCTCACGGCAGCAGTGTCAACTCCTGC 167502 | |||||||| || || || ||||| Sbjct 8517 CTTAACGGCAGCGGTTTCCACCCCTGC 8543 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 567133563976800