Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq952 95.1 1e-14 seq567 95.1 1e-14 seq583 91.5 2e-13 seq3221 89.7 6e-13 seq2531 87.8 2e-12 seq541 87.8 2e-12 seq158 87.8 2e-12 seq35 87.8 2e-12 seq896 86.0 7e-12 seq758 86.0 7e-12 seq736 86.0 7e-12 seq398 86.0 7e-12 seq2654 84.2 2e-11 seq3073 82.4 8e-11 seq1090 82.4 8e-11 seq212 82.4 8e-11 seq24 82.4 8e-11 >seq952 Length=154499 Score = 95.1 bits (104), Expect = 1e-14 Identities = 86/106 (81%), Gaps = 3/106 (3%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | || Sbjct 149190 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGC 149131 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGT 126368 |||||||| || ||||| ||||| | || ||||| | ||||||| Sbjct 149130 GTGGGTTCAAATCCCACTTCTGAC-ATTTTTTATTTTATTTTTTGT 149086 >seq567 Length=193986 Score = 95.1 bits (104), Expect = 1e-14 Identities = 80/96 (83%), Gaps = 3/96 (3%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||| | || || | ||| Sbjct 23323 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGCG 23264 Query 126324 TGGGTTCGAACCCCACACCTGACA-AATTATTATTG 126358 ||||||| || ||||| |||||| ||||||| ||| Sbjct 23263 TGGGTTCAAATCCCACTTCTGACATAATTATTTTTG 23228 >seq583 Length=190413 Score = 91.5 bits (100), Expect = 2e-13 Identities = 78/94 (83%), Gaps = 3/94 (3%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||| | || || | ||| Sbjct 183750 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGCG 183809 Query 126324 TGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 ||||||| || ||||| ||||| ||||||| || Sbjct 183810 TGGGTTCAAATCCCACTTCTGAC-AATTATTTTT 183842 >seq3221 Length=64213 Score = 89.7 bits (98), Expect = 6e-13 Identities = 78/95 (82%), Gaps = 3/95 (3%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||| | || || | ||| Sbjct 3959 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGCG 4018 Query 126324 TGGGTTCGAACCCCACACCTGACAA-ATTATTATT 126357 ||||||| || ||||| ||||||| || ||| || Sbjct 4019 TGGGTTCAAATCCCACTTCTGACAAGATGATTTTT 4053 Score = 86.0 bits (94), Expect = 7e-12 Identities = 70/84 (83%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||| | || || | ||| Sbjct 2596 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGCG 2655 Query 126324 TGGGTTCGAACCCCACACCTGACA 126347 ||||||| || ||||| |||||| Sbjct 2656 TGGGTTCAAATCCCACTTCTGACA 2679 >seq2531 Length=81002 Score = 87.8 bits (96), Expect = 2e-12 Identities = 79/96 (82%), Gaps = 4/96 (4%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTC-CCTCGGGAGCG 126323 ||||||| ||||||||||||||||||||||||| | ||| |||||| | | || | ||| Sbjct 9208 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCAACGAGGGCG 9149 Query 126324 TGGGTTCGAACCCCACACCTGACA-AAT--TATTAT 126356 ||||||| || ||||| |||||| ||| |||||| Sbjct 9148 TGGGTTCAAATCCCACTTCTGACATAATGGTATTAT 9113 >seq541 Length=197661 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/85 (84%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | || Sbjct 134834 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGC 134893 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 |||||||| || ||||| |||||| Sbjct 134894 GTGGGTTCAAATCCCACTTCTGACA 134918 >seq158 Length=296590 Score = 87.8 bits (96), Expect = 2e-12 Identities = 74/90 (82%), Gaps = 2/90 (2%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 21493 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 21550 Query 126328 TTCGAACCCCACACCTGACAAATTATTATT 126357 ||| || |||||| ||| || |||||| || Sbjct 21551 TTCAAATCCCACAGCTGTCAGATTATTTTT 21580 >seq35 Length=412184 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/85 (84%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | || Sbjct 362538 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGC 362597 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 |||||||| || ||||| |||||| Sbjct 362598 GTGGGTTCAAATCCCACTTCTGACA 362622 >seq896 Length=159704 Score = 86.0 bits (94), Expect = 7e-12 Identities = 77/95 (81%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC---GGGAGC 126322 |||||| ||||||||||||||||||||||||| | ||| |||||| |||| | | || Sbjct 67363 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGATGAGGGC 67420 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 |||||||| || ||||| |||||| ||||| || Sbjct 67421 GTGGGTTCAAATCCCACTTCTGACATTTTATTTTT 67455 >seq758 Length=171871 Score = 86.0 bits (94), Expect = 7e-12 Identities = 70/84 (83%), Gaps = 1/84 (1%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTC-CCTCGGGAGCG 126323 ||||||| ||||||||||||||||||||||||| | ||| |||||| | | || | ||| Sbjct 157419 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCAACGAGGGCG 157360 Query 126324 TGGGTTCGAACCCCACACCTGACA 126347 ||||||| || ||||| |||||| Sbjct 157359 TGGGTTCAAATCCCACTTCTGACA 157336 >seq736 Length=174209 Score = 86.0 bits (94), Expect = 7e-12 Identities = 70/84 (83%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||| | || || | ||| Sbjct 44830 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGCG 44771 Query 126324 TGGGTTCGAACCCCACACCTGACA 126347 ||||||| || ||||| |||||| Sbjct 44770 TGGGTTCAAATCCCACTTCTGACA 44747 >seq398 Length=219572 Score = 86.0 bits (94), Expect = 7e-12 Identities = 70/84 (83%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||| | || || | ||| Sbjct 212898 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGCG 212957 Query 126324 TGGGTTCGAACCCCACACCTGACA 126347 ||||||| || ||||| |||||| Sbjct 212958 TGGGTTCAAATCCCACTTCTGACA 212981 >seq2654 Length=77416 Score = 84.2 bits (92), Expect = 2e-11 Identities = 73/90 (81%), Gaps = 2/90 (2%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 62424 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 62367 Query 126328 TTCGAACCCCACACCTGACAAATTATTATT 126357 ||| || |||||| ||| ||| || || || Sbjct 62366 TTCAAATCCCACAGCTGTCAATTTTTTTTT 62337 >seq3073 Length=67461 Score = 82.4 bits (90), Expect = 8e-11 Identities = 81/103 (79%), Gaps = 4/103 (4%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 3015 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGGAAGGGCGTGGG 3072 Query 126328 TTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGTTG 126370 ||| || |||||| ||| || || | | || | |||| |||| Sbjct 3073 TTCAAATCCCACAGCTGTCACATAACTTTT--ATTTTTAGTTG 3113 >seq1090 Length=144628 Score = 82.4 bits (90), Expect = 8e-11 Identities = 71/87 (82%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 39843 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 39900 Query 126328 TTCGAACCCCACACCTGACAAATTATT 126354 ||| || |||||| ||| || ||| || Sbjct 39901 TTCAAATCCCACAGCTGTCATATTTTT 39927 >seq212 Length=271886 Score = 82.4 bits (90), Expect = 8e-11 Identities = 71/87 (82%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 26810 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 26753 Query 126328 TTCGAACCCCACACCTGACAAATTATT 126354 ||| || |||||| ||| ||| || || Sbjct 26752 TTCAAATCCCACAGCTGTCAATTTTTT 26726 >seq24 Length=432444 Score = 82.4 bits (90), Expect = 8e-11 Identities = 71/87 (82%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 351616 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 351673 Query 126328 TTCGAACCCCACACCTGACAAATTATT 126354 ||| || |||||| ||| || ||| || Sbjct 351674 TTCAAATCCCACAGCTGTCATATTTTT 351700 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556764163768920