Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq3499 96.9 2e-15 seq654 96.9 2e-15 seq1091 87.8 1e-12 >seq3499 Length=58236 Score = 96.9 bits (106), Expect = 2e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| |||||| | || || | || ||||| ||||| ||| | || ||| | || Sbjct 9207 ATGCAGATATTTGTGAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTGGAGTCATCA 9148 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || ||| | | | || | ||| ||| ||| || ||||||||| | ||| |||| Sbjct 9147 GACACGATTGACAATGTCAAGGCAAAGATTCAGGACAAAGAGGGTATTCCTCCGGACCAG 9088 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||| | || |||||||||||||| || || || ||| | |||| | || |||||||| Sbjct 9087 CAGCGCCTGATCTTTGCTGGCAAGCAGCTCGAGGATGGACGAACTCTTGCTGATTACAAC 9028 Query 22014 ATTCAGAAGGAATCTACTCTTCA 22036 || |||||||| || || || || Sbjct 9027 ATCCAGAAGGAGTCGACCCTGCA 9005 Score = 96.9 bits (106), Expect = 2e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| |||||| | || || | || ||||| ||||| ||| | || ||| | || Sbjct 10711 ATGCAGATATTTGTGAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTGGAGTCATCA 10652 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || ||| | | | || | ||| ||| ||| || ||||||||| | ||| |||| Sbjct 10651 GACACGATTGACAATGTCAAGGCAAAGATTCAGGACAAAGAGGGTATTCCTCCGGACCAG 10592 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||| | |||||||||||||||||||| || || ||| | || | || |||||||| Sbjct 10591 CAGCGCCTTATCTTTGCTGGCAAACAGCTTGAGGATGGACGGACCCTTGCTGATTACAAC 10532 Query 22014 ATTCAGAAGGAATCTACTCTTCA 22036 || |||||||| || || || || Sbjct 10531 ATCCAGAAGGAGTCGACCCTGCA 10509 >seq654 Length=182673 Score = 96.9 bits (106), Expect = 2e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| |||||| | || || | || ||||| ||||| ||| | || ||| | || Sbjct 10843 ATGCAGATATTTGTGAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTGGAGTCATCA 10784 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || ||| | | | || | ||| ||| ||| || ||||||||| | ||| |||| Sbjct 10783 GACACGATTGACAATGTCAAGGCAAAGATTCAGGACAAAGAGGGTATTCCTCCGGACCAG 10724 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||| | || |||||||||||||| || || || ||| | |||| | || |||||||| Sbjct 10723 CAGCGCCTGATCTTTGCTGGCAAGCAGCTCGAGGATGGACGAACTCTTGCTGATTACAAC 10664 Query 22014 ATTCAGAAGGAATCTACTCTTCA 22036 || |||||||| || || || || Sbjct 10663 ATCCAGAAGGAGTCGACCCTGCA 10641 >seq1091 Length=144125 Score = 87.8 bits (96), Expect = 1e-12 Identities = 103/138 (75%), Gaps = 6/138 (4%) Strand=Plus/Plus Query 21927 GATAAAGAGGGTGT---ACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTA 21983 ||||| ||||| | ||||| |||| |||||||| ||||||||||| || || || Sbjct 81784 GATAAGGAGGGCATCCCACCTG---ACCAGCAGAGACTCATCTTTGCTGGAAAGCAGCTG 81840 Query 21984 GAAGATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCATATGGTA 22043 || ||| | || |||| ||||||||||| |||||||| || |||||||| |||| Sbjct 81841 GAGGATGGACGCACATTGGCTGATTACAATATCCAGAAGGAGTCGACTCTTCACTTGGTC 81900 Query 22044 TTACGTTTACGAGGAGGA 22061 | || | ||||||||| Sbjct 81901 CTCCGCCTTCGAGGAGGA 81918 Score = 82.4 bits (90), Expect = 5e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | || || | |||||||| ||||| || | || ||| | | Sbjct 82147 ATGCAGATCTTTGTCAAGACGCTGACGGGCAAGACCATCACGCTTGAGGTGGAGAGCTCC 82206 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || ||||| || || || || ||||| | ||| | | || Sbjct 82207 GACACCATCGATAATGTTAAGGCCAAGATCCAAGACAAGGAGGGAATTCCTCCAGATCAG 82266 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| |||||||||||||| || || || || ||| ||| |||| |||||||| Sbjct 82267 CAGAGGCTTATCTTTGCTGGGAAGCAGCTGGAGGATGGGCGTACTTTGGCAGATTACAAC 82326 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACG 22048 || ||||||||||| ||||||||| | || || || Sbjct 82327 ATCCAGAAGGAATCCACTCTTCATCTTGTCTTGCG 82361 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358064205619582