Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq3634 370 2e-97 seq1443 370 2e-97 >seq3634 Length=55208 Score = 370 bits (410), Expect = 2e-97 Identities = 530/730 (73%), Gaps = 20/730 (3%) Strand=Plus/Minus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || ||||||||||||||||| |||||||| || |||||||| ||| || | |||||| Sbjct 961 CTCGCCTTCTTCGCCGCCTCGGACGGCATCGTGCTCGAGAACCTCGCCTCCCGCTTCATG 902 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAAC 42542 || |||||| | ||||||||| |||||||||||||||||| ||||| |||||| Sbjct 901 TCCGACGTGCAGGTCGCCGAGGCGCGCGCCTTCTACGGCTTCCAGATCGCCATCGAGAAC 842 Query 42543 GTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGT 42602 | ||||| ||| ||||| | ||||| | |||||||||| || || |||| Sbjct 841 ATCCACTCGGAGATGTACTCGCTGCTGCTGGAGACGTACATCCGCGACGGCGCCGAGAAG 782 Query 42603 AACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCG 42662 || | || ||| ||||| |||||| | ||| | || ||||| || ||||| Sbjct 781 GACCGCCTCTTCCGCGCCATCGAGACGGTCCCCGCCGTCCGCCGCAAGGCCGAGTGGGCC 722 Query 42663 CTCAACTGGATCGAGAGTCCCGA-CGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGC 42721 | ||||||||| | ||| ||| |||| |||| | || || ||||| || Sbjct 721 ATGCGCTGGATCGACGGCGGCGAGCGC----TTCGCCGAGCGCCTAGTCGCCTTCGCCTG 666 Query 42722 CGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAA-GG 42780 ||||||||||||||||||||||||| ||||| | ||||||||||||||||| || || Sbjct 665 CGTCGAGGGCATCTTCTTCTCGGGCTCCTTCTGCGCCATCTTCTGGCTCAAGAAGCGCGG 606 Query 42781 TGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATA 42840 || ||||| || ||||||||||| ||||| |||||| | | |||||||| || || Sbjct 605 CCTC-ATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGCCTCCACT 547 Query 42841 GGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGA--AGGAGCG 42898 | ||||| ||||||||||| | ||| || |||| | |||| ||||| || || Sbjct 546 GCGACTTCGCCTGCCTCCTCT--ACGA-CCTCCTCCGCGGCAAG--CTCGACGAGTCCCG 492 Query 42899 GGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCT 42958 ||||| | ||| || | || ||||| || |||||| |||||| || | |||| Sbjct 491 CGTCCGCGAGATCGTCGCCGACGCCGTCGACATCGAGCGCGAGTTCGTCTGCGACGCGCT 432 Query 42959 GCCCGTG-TCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCG 43017 ||| || | || |||||||||||| || |||||| || |||||||| ||| ||||| Sbjct 431 -CCCATGCGCGCTCGTCGGCATGAACGGCGTGCTCATGAGCCAGTACATCGAGTTCGTCG 373 Query 43018 CCGACCATCTCCT-GTGCCAGATGGGTCTCAGCCGCCTCTACAAC-ACGCCGTGCCCCTT 43075 |||||| || || || | | |||| | || | |||||| |||| ||| || Sbjct 372 CCGACCGCCTGCTCATGGC-GCTGGGCCACAAGAAGATGTACAACGTCGCC-AACCCATT 315 Query 43076 CGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGC 43135 ||||| |||||| ||||| || |||||||||||||||| |||||||||||||||| Sbjct 314 CGACTGGATGGAGCTAATCTCCCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTCGG 255 Query 43136 CGACTACCAG 43145 ||| |||||| Sbjct 254 CGAGTACCAG 245 >seq1443 Length=121453 Score = 370 bits (410), Expect = 2e-97 Identities = 528/729 (72%), Gaps = 18/729 (2%) Strand=Plus/Minus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || ||||||||||||||||| |||||||| || |||||||| ||| || | |||||| Sbjct 26093 CTCGCCTTCTTCGCCGCCTCGGACGGCATCGTGCTCGAGAACCTCGCCTCCCGCTTCATG 26034 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAAC 42542 || |||||| | ||||||||| |||||||||||||||||| ||||| |||||| Sbjct 26033 TCCGACGTGCAGGTCGCCGAGGCGCGCGCCTTCTACGGCTTCCAGATCGCCATCGAGAAC 25974 Query 42543 GTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGT 42602 | ||||| ||| ||||| | ||||| | |||||||||| || || |||| Sbjct 25973 ATCCACTCGGAGATGTACTCGCTGCTGCTGGAGACGTACATCCGCGACGGCGCCGAGAAG 25914 Query 42603 AACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCG 42662 || | || ||| ||||| |||||| | ||| | || ||||| || ||||| Sbjct 25913 GACCGCCTCTTCCGCGCCATCGAGACGGTCCCCGCCGTCCGCCGCAAGGCCGAGTGGGCC 25854 Query 42663 CTCAACTGGATCGAGAGTCCCGA-CGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGC 42721 | ||||||||| | ||| ||| |||| |||| | || || ||||| || Sbjct 25853 ATGCGCTGGATCGACGGCGGCGAGCGC----TTCGCCGAGCGCCTAGTCGCCTTCGCCTG 25798 Query 42722 CGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAA-GG 42780 ||||||||||||||||||||||||| ||||| | ||||||||||||||||| || || Sbjct 25797 CGTCGAGGGCATCTTCTTCTCGGGCTCCTTCTGCGCCATCTTCTGGCTCAAGAAGCGCGG 25738 Query 42781 TGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATA 42840 || ||||| || ||||||||||| ||||| |||||| | | |||||||| || || Sbjct 25737 CCTC-ATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGCCTCCACT 25679 Query 42841 GGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGA--AGGAGCG 42898 | ||||| ||||||||||| | ||| || |||| | |||| ||||| || || Sbjct 25678 GCGACTTCGCCTGCCTCCTCT--ACGA-CCTCCTCCGCGGCAAG--CTCGACGAGTCCCG 25624 Query 42899 GGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCT 42958 ||||| | ||| || | || ||||| || |||||| |||||| || | |||| Sbjct 25623 CGTCCGCGAGATCGTCGCCGACGCCGTCGACATCGAGCGCGAGTTCGTCTGCGACGCGCT 25564 Query 42959 GCCCGTG-TCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCG 43017 ||| || | || |||||||||||| || |||||| || |||||||| ||| ||||| Sbjct 25563 -CCCATGCGCGCTCGTCGGCATGAACGGCGTGCTCATGAGCCAGTACATCGAGTTCGTCG 25505 Query 43018 CCGACCATCTCCT-GTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTC 43076 |||||| || || || || |||| | || | |||||| | ||| ||| Sbjct 25504 CCGACCGCCTGCTCATGGCA-CTGGGGCACAAGAAGATGTACAACGTCACCAACCCATTC 25446 Query 43077 GACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCC 43136 |||| |||||| |||||| || |||||||||||||||| |||||||||||||||| | Sbjct 25445 GACTGGATGGAGCTCATCTCCCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGC 25386 Query 43137 GACTACCAG 43145 || |||||| Sbjct 25385 GAGTACCAG 25377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944175321736080