Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq1443 145 2e-29 seq3634 140 7e-28 >seq1443 Length=121453 Score = 145 bits (160), Expect = 2e-29 Identities = 305/452 (67%), Gaps = 6/452 (1%) Strand=Plus/Minus Query 243289 TTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 243348 || || ||||| || ||||||| | ||||| || || || | || || || ||| Sbjct 25826 TTCGCCGAGCGCCTAGTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCCTTC 25767 Query 243349 TGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAG 243408 ||||||||||| ||||| ||| || | ||||| |||||| | || |||||| Sbjct 25766 TGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGCCTCACCTTCTCCAACGAG 25707 Query 243409 TTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAAAGCTC 243468 ||||| |||||||||||||| ||| | |||| || | || ||| Sbjct 25706 CTCATCTCCCGCGACGAGGGCCTCCACTGCGACTTCGCCTGCCTCCTCTACGACCTCCTC 25647 Query 243469 CAGAACAAGCT--ACCATTCGAAACG-GTCAAACAAATCATCACAGAAGCAGTTGAAAAC 243525 | |||||| || | || || ||| | ||| || | || || || || | | Sbjct 25646 CGCGGCAAGCTCGACGAGTCC---CGCGTCCGCGAGATCGTCGCCGACGCCGTCGACATC 25590 Query 243526 GAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACTC 243585 || || ||| | |||||||| | |||||| ||| | ||||||||| | ||| Sbjct 25589 GAGCGCGAGTTCGTCTGCGACGCGCTCCCATGCGCGCTCGTCGGCATGAACGGCGTGCTC 25530 Query 243586 ATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAA 243645 ||| | ||||||||||| ||||| ||||||||| | |||| || || || | |||| Sbjct 25529 ATGAGCCAGTACATCGAGTTCGTCGCCGACCGCCTGCTCATGGCACTGGGGCACAAGAAG 25470 Query 243646 GTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACT 243705 |||||||| || ||||| || | || ||||||||||| || || || || || || Sbjct 25469 ATGTACAACGTCACCAACCCATTCGACTGGATGGAGCTCATCTCCCTGCAGGGCAAGACC 25410 Query 243706 AACTTCTTCGAAAAGCGTGTCAGTGATTATCA 243737 ||||||||||| ||||| ||| | || || || Sbjct 25409 AACTTCTTCGAGAAGCGCGTCGGCGAGTACCA 25378 >seq3634 Length=55208 Score = 140 bits (154), Expect = 7e-28 Identities = 304/452 (67%), Gaps = 6/452 (1%) Strand=Plus/Minus Query 243289 TTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 243348 || || ||||| || ||||||| | ||||| || || || | || || || ||| Sbjct 694 TTCGCCGAGCGCCTAGTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCCTTC 635 Query 243349 TGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAG 243408 ||||||||||| ||||| ||| || | ||||| |||||| | || |||||| Sbjct 634 TGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGCCTCACCTTCTCCAACGAG 575 Query 243409 TTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAAAGCTC 243468 ||||| |||||||||||||| ||| | |||| || | || ||| Sbjct 574 CTCATCTCCCGCGACGAGGGCCTCCACTGCGACTTCGCCTGCCTCCTCTACGACCTCCTC 515 Query 243469 CAGAACAAGCT--ACCATTCGAAACG-GTCAAACAAATCATCACAGAAGCAGTTGAAAAC 243525 | |||||| || | || || ||| | ||| || | || || || || | | Sbjct 514 CGCGGCAAGCTCGACGAGTCC---CGCGTCCGCGAGATCGTCGCCGACGCCGTCGACATC 458 Query 243526 GAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACTC 243585 || || ||| | |||||||| | |||||| ||| | ||||||||| | ||| Sbjct 457 GAGCGCGAGTTCGTCTGCGACGCGCTCCCATGCGCGCTCGTCGGCATGAACGGCGTGCTC 398 Query 243586 ATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAA 243645 ||| | ||||||||||| ||||| ||||||||| | |||| ||||| || | |||| Sbjct 397 ATGAGCCAGTACATCGAGTTCGTCGCCGACCGCCTGCTCATGGCGCTGGGCCACAAGAAG 338 Query 243646 GTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACT 243705 |||||||| | ||||| || | || |||||||| || || || || || || || Sbjct 337 ATGTACAACGTCGCCAACCCATTCGACTGGATGGAGCTAATCTCCCTGCAGGGCAAGACC 278 Query 243706 AACTTCTTCGAAAAGCGTGTCAGTGATTATCA 243737 ||||||||||| ||||| ||| | || || || Sbjct 277 AACTTCTTCGAGAAGCGCGTCGGCGAGTACCA 246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102683824186050