Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq1443 150 2e-31 seq3634 147 3e-30 seq5229 96.9 4e-15 seq4632 96.9 4e-15 seq3199 95.1 1e-14 seq2924 84.2 3e-11 >seq1443 Length=121453 Score = 150 bits (166), Expect = 2e-31 Identities = 309/452 (68%), Gaps = 8/452 (2%) Strand=Plus/Plus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 ||| || || || ||||||||||||||||| ||||| || | || | ||| |||||| Sbjct 25380 GTACTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTCCAT 25439 Query 125818 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGT-TGGCACCCCAATCTGTTTGAGGAGAC 125876 | || |||||||| | ||| | || | | | ||||| | | ||| || | Sbjct 25440 CCAGTCGAATGGGTTGGTGACGTTGTACATCTTCTTGTGCCCCAGTGCCAT-GAGCAGGC 25498 Query 125877 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTAC 125936 | || | |||| |||| ||||||| ||| | | |||||| |||| ||| | Sbjct 25499 GGTCGGCGACGAACTCGATGTACTGGCTCATGAGCACGCCGTTCATGCCGACGAGCGCGC 25558 Query 125937 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGCGT 125996 ||||||||||||| ||| |||| | ||| || || ||||| || ||||| || Sbjct 25559 ATGGGAGCGCGTCGCAGACGAACTCGCGCTCGATGTCGACGGCGTCGGCGACGATCTCGC 25618 Query 125997 GAATGGTGTCCACCCCAGGTCTATTGCGCA--AAGTCTT-GAAGAGTTCCACGGCAAACT 126053 | | | | | | | | | ||| | | ||| | || ||| || ||| || | Sbjct 25619 GGACGCGGGACTCGTCGAGCTTGCCGCGGAGGAGGTCGTAGAGGAGG--CA-GGCGAAGT 25675 Query 126054 CTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGA 126113 | |||||| |||||||| ||||||||||| || || |||||| || || ||||||| Sbjct 25676 CGCAGTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGA 25735 Query 126114 GACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCA 126173 | || |||||||| | |||||| || || || || || |||||||||||||| ||||| | Sbjct 25736 GGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTCGA 25795 Query 126174 CACACGCGAACGCAAAGAGACGCTCAGCAAAG 126205 | || ||||| || | || ||||| || ||| Sbjct 25796 CGCAGGCGAAGGCGACTAGGCGCTCGGCGAAG 25827 >seq3634 Length=55208 Score = 147 bits (162), Expect = 3e-30 Identities = 310/456 (68%), Gaps = 16/456 (4%) Strand=Plus/Plus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 ||| || || || ||||||||||||||||| ||||| || | || | ||| |||||| Sbjct 248 GTACTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATTAGCTCCAT 307 Query 125818 AAAATCAAATGGGTT-----CTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAGG 125872 | || |||||||| | ||| | || || ||| ||| | | |||| Sbjct 308 CCAGTCGAATGGGTTGGCGACGTTG---TACATCTTCTTGTGGCCC--AGCGCCATGAGC 362 Query 125873 AGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGG 125932 || || || | |||| |||| ||||||| ||| | | |||||| |||| ||| Sbjct 363 AGGCGGTCGGCGACGAACTCGATGTACTGGCTCATGAGCACGCCGTTCATGCCGACGAGC 422 Query 125933 TTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATG 125992 |||||||||||||| ||| |||| | ||| || || ||||| || ||||| Sbjct 423 GCGCATGGGAGCGCGTCGCAGACGAACTCGCGCTCGATGTCGACGGCGTCGGCGACGATC 482 Query 125993 GCGTGAATGGTGTCCACCCCAGGTCTATTGCGCA--AAGTCTT-GAAGAGTTCCACGGCA 126049 || | | | | | | | | | ||| | | ||| | || ||| || ||| Sbjct 483 TCGCGGACGCGGGACTCGTCGAGCTTGCCGCGGAGGAGGTCGTAGAGGAGG--CA-GGCG 539 Query 126050 AACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGC 126109 || || |||||| |||||||| ||||||||||| || || |||||| || || ||| Sbjct 540 AAGTCGCAGTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGC 599 Query 126110 ATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCC 126169 ||||| || |||||||| | |||||| || || || || || |||||||||||||| ||| Sbjct 600 ATGAGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCC 659 Query 126170 TCCACACACGCGAACGCAAAGAGACGCTCAGCAAAG 126205 || || || ||||| || | || ||||| || ||| Sbjct 660 TCGACGCAGGCGAAGGCGACTAGGCGCTCGGCGAAG 695 >seq5229 Length=31845 Score = 96.9 bits (106), Expect = 4e-15 Identities = 276/421 (66%), Gaps = 10/421 (2%) Strand=Plus/Plus Query 10775 ACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATG 10834 || |||| || ||||| || | ||||| ||||| || || ||| |||| ||| Sbjct 26419 ACTGTGACCTGCCGATCGAACCTTCCTGGCCGGAGAAGTGCAGAGTCCAGGACATCGGGC 26478 Query 10835 CGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCA---AAGCCATCCATCTCA 10891 | ||| ||||| || | || | || || | |||| || || ||||||||||| Sbjct 26479 CTGTTTGTCGCGGCAAGCACGATGACACCACT---GTTACCAGCGAATCCATCCATCTCT 26535 Query 10892 GTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATT--CGCGGGCATACCACCCGCAC 10949 |||| | || || ||||| || || | ||||| || | | || || | |||| Sbjct 26536 GTCAGCAACTGGTTAATGGTCTGCTCCCTCTCATCGTTTCCACCACCAAGCC--CGGCAC 26593 Query 10950 TGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTCAC 11009 || ||| | || || || ||||| ||||| ||||| || || || || || | Sbjct 26594 CACGCTGCCTCCCAACAGCATCAATCTCATCAATGAAGACAATGCAGGGCGCCTTGGCCT 26653 Query 11010 GGGCAACTTCAAAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAA 11069 ||| ||||||| || || ||||| |||||||||||| ||||| | || || | Sbjct 26654 TGGCCTTCTCAAAGAGGTCACGCACTCTGGAGGCACCGACACCGACAAAGAGCTCGACGA 26713 Query 11070 AATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGA 11129 | | | |||| || || ||| || || || || || |||| ||| || |||| Sbjct 26714 ACTCAGACGCGGCGCAGGAGAAGAACGGCACCCCGGCCTCTCCGGCGACGGCACGCGCGA 26773 Query 11130 GGAGGGTCTTCCCCGTCCCAGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCAC 11189 |||| || || || ||||||||| || |||| ||| || ||||||| |||| | Sbjct 26774 GGAGAGTTTTACCTGTCCCAGGTGGGCCGACGAGGAGGCAGCCCTTTGGGATCTTGGCTC 26833 Query 11190 C 11190 | Sbjct 26834 C 26834 >seq4632 Length=39362 Score = 96.9 bits (106), Expect = 4e-15 Identities = 276/421 (66%), Gaps = 10/421 (2%) Strand=Plus/Plus Query 10775 ACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATG 10834 ||||||| || ||||| || | ||||| ||||| ||||| ||| || | |||| Sbjct 26350 ACGGTGACCTGCCGATCGAACCTTCCTGGACGGAGAAGGGCAGAGTCCAGAACATCAGGC 26409 Query 10835 CGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCA---AAGCCATCCATCTCA 10891 | ||| ||||| || | || | || || | |||| || || ||||||||||| Sbjct 26410 CTGTTTGTCGCGGCAAGCACGATGACACCACT---GTTACCAGCGAATCCATCCATCTCT 26466 Query 10892 GTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATT--CGCGGGCATACCACCCGCAC 10949 |||| | || || ||||| || || | ||||| || | | || || | |||| Sbjct 26467 GTCAGCAACTGGTTAATGGTCTGCTCCCTCTCATCGTTTCCACCACCAAGCC--CGGCAC 26524 Query 10950 TGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTCAC 11009 || ||| | || || || ||||| ||||| ||||| || || || || || | Sbjct 26525 CACGCTGCCTCCCAACAGCATCAATCTCATCAATGAAGACAATGCAGGGCGCCTTGGCCT 26584 Query 11010 GGGCAACTTCAAAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAA 11069 ||| ||||||| || || ||||| |||||||||||| ||||| | || || | Sbjct 26585 TGGCCTTCTCAAAGAGGTCACGCACTCTGGAGGCACCGACACCGACAAAGAGCTCGACGA 26644 Query 11070 AATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGA 11129 | | | || | || || ||| || || || || || |||| ||| || |||| Sbjct 26645 ACTCTGACGCAGCGCAGGAGAAGAACGGCACCCCGGCCTCTCCGGCGACGGCACGCGCGA 26704 Query 11130 GGAGGGTCTTCCCCGTCCCAGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCAC 11189 |||| || || || |||||||| || |||| ||| || ||||||| |||| | Sbjct 26705 GGAGAGTTTTACCTGTCCCAGGCGGGCCGACGAGGAGGCAGCCCTTTGGGATCTTGGCTC 26764 Query 11190 C 11190 | Sbjct 26765 C 26765 >seq3199 Length=64821 Score = 95.1 bits (104), Expect = 1e-14 Identities = 294/447 (66%), Gaps = 10/447 (2%) Strand=Plus/Plus Query 10710 CCAACTTCTTGTCTCTGGCGTGGA-CACCCAAA--ATCTTCTCGCGACCGCGCACACTGG 10766 ||| |||||||| ||||| | ||||| | |||| ||| || || ||||| || Sbjct 33851 CCAGCTTCTTGT---TGGCGCAGTGCACCCTGAGGATCTCCTCCCGTCCCCGCACGTCGG 33907 Query 10767 GTAGGGACACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGA 10826 | || |||| || || ||||| || | || || ||||| || || |||| |||| Sbjct 33908 GAAGCCCGACGGCGACCTGCCGATCGAACCTCCCGGGCCGGAGAAGCGCCGCGTCGAGGA 33967 Query 10827 TATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCA 10886 | || ||||| || || |||||||| | || ||| | ||| | || || |||| Sbjct 33968 TGTCGGGCCGGTTGGTTGCTGCGATGACGATGACGCCGCTGTCGCCGGCGAACCCGTCCA 34027 Query 10887 TCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCGG-GCATACCACCC 10945 |||| || | || || |||| || || || || || || ||| || || | ||| Sbjct 34028 TCTCCGTGAGCAGCTGGTTGAGCGTCTGCTCCCGCTCGTCGTTCCCGCCGCCGATG-CCC 34086 Query 10946 GCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTT 11005 || | ||| ||| ||||||||||| || || |||| ||| |||| ||||| Sbjct 34087 GCGCCGCGCTGCCGTCCGACGGCGTCGATCTCGTCGACGAACACGAGGCACGGCGCGGCG 34146 Query 11006 TCACGGGCAACTTCAAAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCC 11065 | ||| || |||| || || || | | || || || ||||| ||||| || Sbjct 34147 GCCTTGGCCCGGTCGAAGAGGTCCCGCACCCGCGACGCGCCCACTCCCACGAACATCTCG 34206 Query 11066 ACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCG 11124 | || | || ||| ||| | || |||||| || || ||| |||||||| || Sbjct 34207 ATGAACTCGGACCCGG-ACAGCGAGAAGAAGGGCACCCCGGCTTCCCCCGCGATCGCCTT 34265 Query 11125 GGCGAGGAGGGTCTTCCCCGTCCCAGG 11151 ||| || || ||||||||||| || || Sbjct 34266 GGCCAGCAGCGTCTTCCCCGTGCCCGG 34292 >seq2924 Length=71133 Score = 84.2 bits (92), Expect = 3e-11 Identities = 212/318 (67%), Gaps = 6/318 (2%) Strand=Plus/Minus Query 10837 GTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAA 10896 ||| || || || || |||| ||| || || | ||||| ||||||||||||||||| Sbjct 65656 GTTAGTGGCGGCAATAACAATGATTCCAGTGTTCCCCTCAAAACCATCCATCTCAGTCAA 65597 Query 10897 GAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCGGGCATACCACCCGCACTGCGTTG 10956 |||||||| | || || || | ||||||||| | | ||| | | | ||| Sbjct 65596 TAGTTGATTCAGAGTCTGCTCCCTTTCATCATTTCCACCACCAATACCGGTTCCTCTTTG 65537 Query 10957 CTTACCGACGGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTCACGGGCAAC 11016 | | || || || || |||||||| | || || || || || || || ||| | Sbjct 65536 CCTTCCAACAGCATCGATTTCATCAACAAACACTATGCAAGGGGCGTTCTCCTTGGC--C 65479 Query 11017 TTC--AAAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATTG 11074 ||| ||||| ||| || || | |||||| ||||| |||||||| |||||||| | Sbjct 65478 TTCTTAAAGAGATCACGAACCCGGGAGGCACCAACACCGACAAACATCTCCACAAACTCA 65419 Query 11075 GCGGCGGAACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAG 11133 | ||| | |||| || ||| || || | ||| || || || || ||| || | Sbjct 65418 GATCCGG-ATATTGAGAAGAAAGGCACACCAGCTTCTCCTGCAATTGCCTTGGCAAGCAA 65360 Query 11134 GGTCTTCCCCGTCCCAGG 11151 ||||| || || ||||| Sbjct 65359 AGTCTTACCAGTTCCAGG 65342 Score = 84.2 bits (92), Expect = 3e-11 Identities = 212/318 (67%), Gaps = 6/318 (2%) Strand=Plus/Minus Query 10837 GTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAA 10896 ||| || || || || |||| ||| || || | ||||| ||||||||||||||||| Sbjct 66210 GTTAGTGGCAGCAATAACAATGATTCCAGTGTTCCCCTCAAAACCATCCATCTCAGTCAA 66151 Query 10897 GAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCGGGCATACCACCCGCACTGCGTTG 10956 |||||||| | || || || | ||||||||| | | ||| | | | ||| Sbjct 66150 AAGTTGATTCAGAGTCTGCTCCCTTTCATCATTTCCACCACCAATACCGGTTCCTCTTTG 66091 Query 10957 CTTACCGACGGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTCACGGGCAAC 11016 | | || || || || |||||||| | || || || || || || || ||| | Sbjct 66090 CCTTCCAACAGCATCGATTTCATCAACAAACACTATGCAAGGGGCGTTCTCCTTGGC--C 66033 Query 11017 TTC--AAAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATTG 11074 ||| ||||| ||| || || | |||||| ||||| |||||||| |||||||| | Sbjct 66032 TTCTTAAAGAGATCACGAACCCGGGAGGCACCAACACCGACAAACATCTCCACAAACTCA 65973 Query 11075 GCGGCGGAACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAG 11133 | ||| | |||| || ||| || || | ||| || || || || ||| || | Sbjct 65972 GATCCGG-ATATTGAGAAGAAAGGCACACCAGCTTCTCCTGCAATTGCCTTGGCAAGCAA 65914 Query 11134 GGTCTTCCCCGTCCCAGG 11151 ||||| || || ||||| Sbjct 65913 AGTCTTACCAGTTCCAGG 65896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597249936749640