Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= NC_013085.1 Length=194454 Score E Sequences producing significant alignments: (Bits) Value seq5025 118 1e-21 seq6788 111 2e-19 seq4399 89.7 6e-13 >seq5025 Length=34140 Score = 118 bits (130), Expect = 1e-21 Identities = 230/337 (68%), Gaps = 2/337 (1%) Strand=Plus/Plus Query 6940 CATGAAACCTATAAGGGCAAAGGCTCCGTGGAGCGCCACAAAAGGCCATAGTCCCCCAAG 6999 |||||||||||| || ||||| || || || || || ||||||| ||| || || || | Sbjct 13893 CATGAAACCTATTAGTGCAAAAGCCCCATGTAGAGCAACAAAAGTCCACAGACCACCTAA 13952 Query 7000 TTGGAGCCAGCGGACGAAATCTCCCTGAGCTTCTGGACCCCATAGAAGAAGTAGGGAATG 7059 ||| ||| || ||||| || || ||||| || |||||||| || | | || || Sbjct 13953 TTGACACCAACGAGTAAAATCCCCTTGTGCTTCCGGTCCCCATAGTAGCAACAAAGAGTG 14012 Query 7060 TCCGAGAGCGTCAGCAGGAGTTGATACAGCAGCAGTAAGGAAATTACATCCCTCAAGATA 7119 | | | | | ||||| || || || || || || | |||||| || || || | ||| Sbjct 14013 TGCTAAACTATTGGCAGGGGTGGAAACCGCTGCCGTTAAGAAATTGCAACCTTCCAAATA 14072 Query 7120 CGAAGAAGCAATCCCGTGAGTGTACCAGCTCGTGACGAAAGTTGTGCCCGTGAGCCAACC 7179 ||| ||| | || || || ||||| || || ||||| || || || | |||||| Sbjct 14073 GGAACTAGCTAATCCATGGGTATACCAAGAAGTTACAAAAGTAGTCCCTGTAAACCAACC 14132 Query 7180 GCCCAGTGCCAGGTAAGCAGTAGGGAACAGAAGAAGACCTGACCAACCAACAAAAACGAA 7239 || | || | |||||| ||| || || | || | ||||| || ||||||||||| Sbjct 14133 CCCTAAAGCGAAATAAGCACAAGGAAAGAGCAATAGGCTGGACCATCCTACAAAAACGAA 14192 Query 7240 CCTATCAC-GCTTAAGCCAGTCATCGAGTACATCAAA 7275 | || | | ||| |||||| || | | |||||| Sbjct 14193 ACGGTCCCTTCGTAA-CCAGTCGTCCATAATATCAAA 14228 >seq6788 Length=15930 Score = 111 bits (122), Expect = 2e-19 Identities = 142/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 8329 ACCAGAGATGATGTTGTTGCCATACATGAGCGAACCAGCGACGGGTTCACGGATGCCGTC 8388 ||||||||| || ||||| ||||| | | ||||||| || || ||||| || || || Sbjct 6475 ACCAGAGATAATATTGTTTCCATAAAGTAAAGAACCAGAAACAGGCTCACGAATACCATC 6534 Query 8389 AATGTCCACAGGAGGAGCAGCGACGAAAGCGACGATGAA-ACAAATAGCAGCAGCGAGCA 8447 ||| || || ||||||||||||| ||| |||| || || || | || || | | | Sbjct 6535 AATATCTACTGGAGGAGCAGCGATGAAGGCGATAATAAATACGGA-AGTTGCGGTCAATA 6593 Query 8448 GCGTAGGAATCATCAGGACACCGAACCAACCGACATACAGACGATTGTTGGTGGAGGTTA 8507 ||||| ||||||| ||||| ||||| |||| || |||||||| | |||| |||| Sbjct 6594 AGGTAGGGATCATCAAAACACCAAACCATCCGATGTAAAGACGATTTTCGGTGCTAGTTA 6653 Query 8508 CCCAGTTACAGAA 8520 |||||| ||||| Sbjct 6654 TCCAGTTGCAGAA 6666 >seq4399 Length=42927 Score = 89.7 bits (98), Expect = 6e-13 Identities = 78/97 (80%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 6491 ACAGGAACAAACAGCATAAAGAAATGTAGCCAACGCTTATTGCTGAAGGCGATACCAAAG 6550 || || ||||| |||||||||||||||| |||||| |||||| || || | ||||||| Sbjct 11221 ACGGGTACAAATAGCATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACACCAAAG 11162 Query 6551 ATCTGAGACCAGAAACGATTAGCCGTGACCATCGAAT 6587 || || ||||| || || ||||| || ||||| |||| Sbjct 11161 ATTTGGGACCAAAAGCGGTTAGCAGTAACCATTGAAT 11125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622016838017520