Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq1443 156 5e-33 seq3634 152 6e-32 seq3199 114 2e-20 seq5229 104 3e-17 seq4632 104 3e-17 seq2924 82.4 9e-11 >seq1443 Length=121453 Score = 156 bits (172), Expect = 5e-33 Identities = 310/452 (69%), Gaps = 8/452 (2%) Strand=Plus/Plus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 ||| || ||||| ||||||||||||||||| ||||| || | ||| ||| |||||| Sbjct 25380 GTACTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTCCAT 25439 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGT-TGGCACCCCAATCTGTTTGAGGAGAC 127349 | || |||||||| | ||| | || | | | ||||| | | ||| || | Sbjct 25440 CCAGTCGAATGGGTTGGTGACGTTGTACATCTTCTTGTGCCCCAGTGCCAT-GAGCAGGC 25498 Query 127350 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTAC 127409 | || | |||| |||| ||||||| ||| | | |||||| |||| ||| | Sbjct 25499 GGTCGGCGACGAACTCGATGTACTGGCTCATGAGCACGCCGTTCATGCCGACGAGCGCGC 25558 Query 127410 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCGT 127469 ||||||||||||| ||| |||| | ||| ||||| || || || ||||| || Sbjct 25559 ATGGGAGCGCGTCGCAGACGAACTCGCGCTCGATGTCGACGGCGTCGGCGACGATCTCGC 25618 Query 127470 GAATAGTGTCCACCCCAGGTCTATTGCGTA--AAGTCTT-GAAGAGTTCCACAGCAAACT 127526 | | | | | | | | ||| | | ||| | || ||| || || || | Sbjct 25619 GGACGCGGGACTCGTCGAGCTTGCCGCGGAGGAGGTCGTAGAGGAGG--CAG-GCGAAGT 25675 Query 127527 CTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGA 127586 | |||||| |||||||| ||||||||||| || || |||||| || || ||||||| Sbjct 25676 CGCAGTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGA 25735 Query 127587 GACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCA 127646 | || |||||||| | |||||| || || || || ||||| ||||||||||| ||||| | Sbjct 25736 GGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTCGA 25795 Query 127647 CACACGCGAACGCAAATAGACGCTCGGCAAAG 127678 | || ||||| || | ||| |||||||| ||| Sbjct 25796 CGCAGGCGAAGGCGACTAGGCGCTCGGCGAAG 25827 >seq3634 Length=55208 Score = 152 bits (168), Expect = 6e-32 Identities = 311/456 (68%), Gaps = 16/456 (4%) Strand=Plus/Plus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 ||| || ||||| ||||||||||||||||| ||||| || | ||| ||| |||||| Sbjct 248 GTACTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATTAGCTCCAT 307 Query 127291 AAAATCAAATGGGTT-----CTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAGG 127345 | || |||||||| | ||| | || || ||| ||| | | |||| Sbjct 308 CCAGTCGAATGGGTTGGCGACGTTG---TACATCTTCTTGTGGCCC--AGCGCCATGAGC 362 Query 127346 AGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGG 127405 || || || | |||| |||| ||||||| ||| | | |||||| |||| ||| Sbjct 363 AGGCGGTCGGCGACGAACTCGATGTACTGGCTCATGAGCACGCCGTTCATGCCGACGAGC 422 Query 127406 TTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATG 127465 |||||||||||||| ||| |||| | ||| ||||| || || || ||||| Sbjct 423 GCGCATGGGAGCGCGTCGCAGACGAACTCGCGCTCGATGTCGACGGCGTCGGCGACGATC 482 Query 127466 GCGTGAATAGTGTCCACCCCAGGTCTATTGCGTA--AAGTCTT-GAAGAGTTCCACAGCA 127522 || | | | | | | | | ||| | | ||| | || ||| || || Sbjct 483 TCGCGGACGCGGGACTCGTCGAGCTTGCCGCGGAGGAGGTCGTAGAGGAGG--CAG-GCG 539 Query 127523 AACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGC 127582 || || |||||| |||||||| ||||||||||| || || |||||| || || ||| Sbjct 540 AAGTCGCAGTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGC 599 Query 127583 ATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCC 127642 ||||| || |||||||| | |||||| || || || || ||||| ||||||||||| ||| Sbjct 600 ATGAGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCC 659 Query 127643 TCCACACACGCGAACGCAAATAGACGCTCGGCAAAG 127678 || || || ||||| || | ||| |||||||| ||| Sbjct 660 TCGACGCAGGCGAAGGCGACTAGGCGCTCGGCGAAG 695 >seq3199 Length=64821 Score = 114 bits (126), Expect = 2e-20 Identities = 297/445 (67%), Gaps = 6/445 (1%) Strand=Plus/Plus Query 12625 CCAACTTCTTGTCTCGGGC-GTGGACACCCAAAATCTTCTCGCGTCCGCGCACACTGGGT 12683 ||| |||||||| | | || ||| || | | |||| ||| ||||| ||||| ||| Sbjct 33851 CCAGCTTCTTGT-TGGCGCAGTGCACCCTGAGGATCTCCTCCCGTCCCCGCACGTCGGGA 33909 Query 12684 AGGGACACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATA 12743 || |||| || || ||||| || | || || ||||| || || |||| ||||| Sbjct 33910 AGCCCGACGGCGACCTGCCGATCGAACCTCCCGGGCCGGAGAAGCGCCGCGTCGAGGATG 33969 Query 12744 TCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATC 12803 || ||||| || || |||||||| | || ||| | ||| |||| || |||||| Sbjct 33970 TCGGGCCGGTTGGTTGCTGCGATGACGATGACGCCGCTGTCGCCGGCGAACCCGTCCATC 34029 Query 12804 TCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGG-GCATACCACCCGC 12862 || || | || || |||| || || || || || || ||| || || | ||||| Sbjct 34030 TCCGTGAGCAGCTGGTTGAGCGTCTGCTCCCGCTCGTCGTTCCCGCCGCCGATG-CCCGC 34088 Query 12863 ACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTC 12922 | ||| ||| ||||||||||| || ||||| | ||| |||| ||||| | Sbjct 34089 GCCGCGCTGCCGTCCGACGGCGTCGATCTCGTCGACGAACACGAGGCACGGCGCGGCGGC 34148 Query 12923 ACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCAC 12982 ||| || |||| || ||||| | | || || || ||||| |||||||| | Sbjct 34149 CTTGGCCCGGTCGAAGAGGTCCCGCACCCGCGACGCGCCCACTCCCACGAACATCTCGAT 34208 Query 12983 AAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGG 13041 || | || ||| ||| | || |||||| || || ||| |||||||| || || Sbjct 34209 GAACTCGGACCCGG-ACAGCGAGAAGAAGGGCACCCCGGCTTCCCCCGCGATCGCCTTGG 34267 Query 13042 CGAGGAGGGTCTTCCCCGTCCCTGG 13066 | || || ||||||||||| || || Sbjct 34268 CCAGCAGCGTCTTCCCCGTGCCCGG 34292 >seq5229 Length=31845 Score = 104 bits (114), Expect = 3e-17 Identities = 275/418 (66%), Gaps = 4/418 (1%) Strand=Plus/Plus Query 12690 ACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATG 12749 || |||| || ||||| || | ||||| ||||| || || ||| |||| ||| Sbjct 26419 ACTGTGACCTGCCGATCGAACCTTCCTGGCCGGAGAAGTGCAGAGTCCAGGACATCGGGC 26478 Query 12750 CGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTC 12809 | ||| ||||| || | || | || || | | | |||| ||||||||||| ||| Sbjct 26479 CTGTTTGTCGCGGCAAGCACGATGACACCACTGTTACCAGCGAATCCATCCATCTCTGTC 26538 Query 12810 AAGAGTTGATTGATGGTTTGTTCACGTTCATCATT--CGCGGGCATACCACCCGCACTGC 12867 | | || || ||||| || || | ||||| || | | || || | |||| | Sbjct 26539 AGCAACTGGTTAATGGTCTGCTCCCTCTCATCGTTTCCACCACCAAGCC--CGGCACCAC 26596 Query 12868 GTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGG 12927 | ||| | || || || ||||| || |||||||| || || || || || | || Sbjct 26597 GCTGCCTCCCAACAGCATCAATCTCATCAATGAAGACAATGCAGGGCGCCTTGGCCTTGG 26656 Query 12928 CAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAAT 12987 | ||||||| || |||||||| |||||||||||| ||||| | ||| || || | Sbjct 26657 CCTTCTCAAAGAGGTCACGCACTCTGGAGGCACCGACACCGACAAAGAGCTCGACGAACT 26716 Query 12988 TGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGA 13047 | |||| || || ||| || || || || || |||| ||| || ||||||| Sbjct 26717 CAGACGCGGCGCAGGAGAAGAACGGCACCCCGGCCTCTCCGGCGACGGCACGCGCGAGGA 26776 Query 13048 GGGTCTTCCCCGTCCCTGGTTTCCCCGCGAGAAGGGCACCACGTGGGATCCTGGCACC 13105 | || || || ||||| ||| || |||| ||| || ||||||| |||| || Sbjct 26777 GAGTTTTACCTGTCCCAGGTGGGCCGACGAGGAGGCAGCCCTTTGGGATCTTGGCTCC 26834 >seq4632 Length=39362 Score = 104 bits (114), Expect = 3e-17 Identities = 275/418 (66%), Gaps = 4/418 (1%) Strand=Plus/Plus Query 12690 ACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATG 12749 ||||||| || ||||| || | ||||| ||||| ||||| ||| || | |||| Sbjct 26350 ACGGTGACCTGCCGATCGAACCTTCCTGGACGGAGAAGGGCAGAGTCCAGAACATCAGGC 26409 Query 12750 CGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTC 12809 | ||| ||||| || | || | || || | | | |||| ||||||||||| ||| Sbjct 26410 CTGTTTGTCGCGGCAAGCACGATGACACCACTGTTACCAGCGAATCCATCCATCTCTGTC 26469 Query 12810 AAGAGTTGATTGATGGTTTGTTCACGTTCATCATT--CGCGGGCATACCACCCGCACTGC 12867 | | || || ||||| || || | ||||| || | | || || | |||| | Sbjct 26470 AGCAACTGGTTAATGGTCTGCTCCCTCTCATCGTTTCCACCACCAAGCC--CGGCACCAC 26527 Query 12868 GTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGG 12927 | ||| | || || || ||||| || |||||||| || || || || || | || Sbjct 26528 GCTGCCTCCCAACAGCATCAATCTCATCAATGAAGACAATGCAGGGCGCCTTGGCCTTGG 26587 Query 12928 CAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAAT 12987 | ||||||| || |||||||| |||||||||||| ||||| | ||| || || | Sbjct 26588 CCTTCTCAAAGAGGTCACGCACTCTGGAGGCACCGACACCGACAAAGAGCTCGACGAACT 26647 Query 12988 TGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGA 13047 | || | || || ||| || || || || || |||| ||| || ||||||| Sbjct 26648 CTGACGCAGCGCAGGAGAAGAACGGCACCCCGGCCTCTCCGGCGACGGCACGCGCGAGGA 26707 Query 13048 GGGTCTTCCCCGTCCCTGGTTTCCCCGCGAGAAGGGCACCACGTGGGATCCTGGCACC 13105 | || || || ||||| || || |||| ||| || ||||||| |||| || Sbjct 26708 GAGTTTTACCTGTCCCAGGCGGGCCGACGAGGAGGCAGCCCTTTGGGATCTTGGCTCC 26765 >seq2924 Length=71133 Score = 82.4 bits (90), Expect = 9e-11 Identities = 161/236 (68%), Gaps = 4/236 (2%) Strand=Plus/Minus Query 12752 GTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTCAA 12811 ||| || || || || |||| ||| || || | || || ||||||||||||||||| Sbjct 65656 GTTAGTGGCGGCAATAACAATGATTCCAGTGTTCCCCTCAAAACCATCCATCTCAGTCAA 65597 Query 12812 GAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGGCATACCACCCGCACTGCGTTG 12871 |||||||| | || || || | ||||||||| | | ||| | | | ||| Sbjct 65596 TAGTTGATTCAGAGTCTGCTCCCTTTCATCATTTCCACCACCAATACCGGTTCCTCTTTG 65537 Query 12872 CTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAAC 12931 | | || || || || ||||| |||| || || || || || || || ||| | Sbjct 65536 CCTTCCAACAGCATCGATTTCATCAACAAACACTATGCAAGGGGCGTTCTCCTTGGC--C 65479 Query 12932 TTC--AAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAA 12985 ||| ||||| ||| || || | |||||| ||||| ||||||||||||||||| Sbjct 65478 TTCTTAAAGAGATCACGAACCCGGGAGGCACCAACACCGACAAACATCTCCACAAA 65423 Score = 82.4 bits (90), Expect = 9e-11 Identities = 161/236 (68%), Gaps = 4/236 (2%) Strand=Plus/Minus Query 12752 GTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTCAA 12811 ||| || || || || |||| ||| || || | || || ||||||||||||||||| Sbjct 66210 GTTAGTGGCAGCAATAACAATGATTCCAGTGTTCCCCTCAAAACCATCCATCTCAGTCAA 66151 Query 12812 GAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGGCATACCACCCGCACTGCGTTG 12871 |||||||| | || || || | ||||||||| | | ||| | | | ||| Sbjct 66150 AAGTTGATTCAGAGTCTGCTCCCTTTCATCATTTCCACCACCAATACCGGTTCCTCTTTG 66091 Query 12872 CTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAAC 12931 | | || || || || ||||| |||| || || || || || || || ||| | Sbjct 66090 CCTTCCAACAGCATCGATTTCATCAACAAACACTATGCAAGGGGCGTTCTCCTTGGC--C 66033 Query 12932 TTC--AAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAA 12985 ||| ||||| ||| || || | |||||| ||||| ||||||||||||||||| Sbjct 66032 TTCTTAAAGAGATCACGAACCCGGGAGGCACCAACACCGACAAACATCTCCACAAA 65977 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613400733494280