Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq3634 159 6e-34 seq1443 159 6e-34 >seq3634 Length=55208 Score = 159 bits (176), Expect = 6e-34 Identities = 417/625 (67%), Gaps = 26/625 (4%) Strand=Plus/Plus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 ||||||||| |||||||||||||||| || ||| ||| ||||| | |||||||||| Sbjct 263 CTTCTCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATTAGCTCCATCCAGTCGAATGGGTT 322 Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768 |||| || |||| || || ||| |||| | ||| || || || || Sbjct 323 GGCGACGTTGTACATCTTCTTGTGGCCCAGCGCCATGAGCAGGCGGTCGGCGACGAACTC 382 Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGA 159828 |||||| | ||| || | | ||| || || | ||| |||||||| || | Sbjct 383 GATGTACTGGCTCATGAGCACGCCGTTCATGCCGACGAGCGCGCATGGGAGCGCGTCGCA 442 Query 159829 CAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCT-GCGAGACACGT---TCGT 159884 | ||||| ||| || ||||| || |||| || |||| ||| ||| || |||| Sbjct 443 GACGAACTCGCGCTCGATGTCGACGGCGTCGGCGACGATCTCGCG-GACGCGGGACTCGT 501 Query 159885 ACCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTC 159944 | ||||||| | | |||| | | |||||||| || ||||||||||| || | Sbjct 502 ---CGAGCTTGCCGCGGAGGAGGTCGT---AGAGGAGGCAGGCGAAGTCGCAGTGGAGGC 555 Query 159945 CCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTT 160004 ||||||| || ||||||| ||||||||| | | ||||||||||||||| || ||| | Sbjct 556 CCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGGCCGCGCTTCT 615 Query 160005 TGAGCCAAAAAATGGCCGCAAAAGCACCGCTA-AAAAAGATCCCCTCCACGGCCGCAAAC 160063 ||||||| || |||| |||| ||| | | | | || ||||| ||||| ||| || || Sbjct 616 TGAGCCAGAAGATGG-CGCAGAAGGAGCCCGAGAAGAAGATGCCCTCGACGCAGGCGAAG 674 Query 160064 GCCACGAGCCTCTCACCAAAAGAGGCG-TTGGTGTCATGGGTCCACCTTTTGGCCCATTC 160122 || || || | ||| | || ||| | | | | | | |||| | ||||||| || Sbjct 675 GCGACTAGGCGCTCGGC----GAAGCGCTCGCCGCCGTCGATCCAGCGCATGGCCCACTC 730 Query 160123 AGCCTTCTTTGCGATGCACGGCATG---CG-CTCGACGGCGTTAAACAATCTGTCCTGCT 160178 ||| ||||| | ||||| | || ||||| |||| || | | ||||| || Sbjct 731 GGCC----TTGCGGCGGACGGCGGGGACCGTCTCGATGGCGCGGAAGAGGCGGTCCTTCT 786 Query 160179 CCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTT 160238 | | || ||| || | | |||| ||||||||| || | ||| | || | Sbjct 787 CGGCGCCGTCGCGGATGTACGTCTCCAGCAGCAGCGAGTACATCTCCGAGTGGATGTTCT 846 Query 160239 CGATGGCCATCTGAAAGTTGTAGAA 160263 ||||||| ||||| ||| |||||| Sbjct 847 CGATGGCGATCTGGAAGCCGTAGAA 871 >seq1443 Length=121453 Score = 159 bits (176), Expect = 6e-34 Identities = 417/625 (67%), Gaps = 26/625 (4%) Strand=Plus/Plus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 ||||||||| |||||||||||||||| || ||| || ||||| | |||||||||| Sbjct 25395 CTTCTCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTCCATCCAGTCGAATGGGTT 25454 Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768 | |||| || |||| || || ||| |||| | ||| || || || || Sbjct 25455 GGTGACGTTGTACATCTTCTTGTGCCCCAGTGCCATGAGCAGGCGGTCGGCGACGAACTC 25514 Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGA 159828 |||||| | ||| || | | ||| || || | ||| |||||||| || | Sbjct 25515 GATGTACTGGCTCATGAGCACGCCGTTCATGCCGACGAGCGCGCATGGGAGCGCGTCGCA 25574 Query 159829 CAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCT-GCGAGACACGT---TCGT 159884 | ||||| ||| || ||||| || |||| || |||| ||| ||| || |||| Sbjct 25575 GACGAACTCGCGCTCGATGTCGACGGCGTCGGCGACGATCTCGCG-GACGCGGGACTCGT 25633 Query 159885 ACCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTC 159944 | ||||||| | | |||| | | |||||||| || ||||||||||| || | Sbjct 25634 ---CGAGCTTGCCGCGGAGGAGGTCGT---AGAGGAGGCAGGCGAAGTCGCAGTGGAGGC 25687 Query 159945 CCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTT 160004 ||||||| || ||||||| ||||||||| | | ||||||||||||||| || ||| | Sbjct 25688 CCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGGCCGCGCTTCT 25747 Query 160005 TGAGCCAAAAAATGGCCGCAAAAGCACCGCTA-AAAAAGATCCCCTCCACGGCCGCAAAC 160063 ||||||| || |||| |||| ||| | | | | || ||||| ||||| ||| || || Sbjct 25748 TGAGCCAGAAGATGG-CGCAGAAGGAGCCCGAGAAGAAGATGCCCTCGACGCAGGCGAAG 25806 Query 160064 GCCACGAGCCTCTCACCAAAAGAGGCG-TTGGTGTCATGGGTCCACCTTTTGGCCCATTC 160122 || || || | ||| | || ||| | | | | | | |||| | ||||||| || Sbjct 25807 GCGACTAGGCGCTCGGC----GAAGCGCTCGCCGCCGTCGATCCAGCGCATGGCCCACTC 25862 Query 160123 AGCCTTCTTTGCGATGCACGGCATG---CG-CTCGACGGCGTTAAACAATCTGTCCTGCT 160178 ||| ||||| | ||||| | || ||||| |||| || | | ||||| || Sbjct 25863 GGCC----TTGCGGCGGACGGCGGGGACCGTCTCGATGGCGCGGAAGAGGCGGTCCTTCT 25918 Query 160179 CCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTT 160238 | | || ||| || | | |||| ||||||||| || | ||| | || | Sbjct 25919 CGGCGCCGTCGCGGATGTACGTCTCCAGCAGCAGCGAGTACATCTCCGAGTGGATGTTCT 25978 Query 160239 CGATGGCCATCTGAAAGTTGTAGAA 160263 ||||||| ||||| ||| |||||| Sbjct 25979 CGATGGCGATCTGGAAGCCGTAGAA 26003 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795017210754480