Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq618 138 4e-27 seq1279 118 4e-21 seq1019 118 4e-21 seq2485 100 1e-15 seq663 84.2 9e-11 >seq618 Length=186356 Score = 138 bits (152), Expect = 4e-27 Identities = 251/367 (68%), Gaps = 9/367 (2%) Strand=Plus/Minus Query 451245 CTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTG 451304 ||||||||||||| || |||||||||| || ||| || | || ||| ||| | | Sbjct 65358 CTGAAGAAATTTCTTCCATGGTTCTTATCAAGATGCGTGAGATCGCGGAAGCTTATCTCG 65299 Query 451305 GTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGC 451364 | || | || | |||| || | |||||||| ||||| ||||||||| |||| ||| Sbjct 65298 GATCAGCTGTGAAGAATGCTGTTGTGACTGTTCCTGCTTACTTCAATGATTCACAGAGGC 65239 Query 451365 AAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAAC 451424 | ||||| || ||||| || |||||||||| | ||||| | || || || ||||| | Sbjct 65238 AGGCAACCAAGGATGCTGGCGTTATTGCTGGTCTCAATGTCATGCGCATCATCAATGAGC 65179 Query 451425 CTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAAC------AGAAGaaa 451478 |||| || |||||| | |||||||| || | || || | || | || | Sbjct 65178 CTACTGCTGCTGCTATTGCATATGGTCTTGACAA---GAAGGCTACTAGTGTTGGTGAGA 65122 Query 451479 aaaaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTG 451538 | ||| | | | || || | ||||| || ||| |||| ||| ||||| | |||| Sbjct 65121 AGAATGTGCTTATTTTCGACCTCGGTGGTGGCACTTTTGATGTCTCTCTACTTACTATTG 65062 Query 451539 AAGATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATA 451598 | || || | ||||| || || || || |||||| ||||| || || || || || Sbjct 65061 AGGAGGGTATCTTTGAGGTGAAAGCCACTGCTGGTGACACTCACCTTGGTGGGGAGGACT 65002 Query 451599 TTGATAA 451605 ||||||| Sbjct 65001 TTGATAA 64995 >seq1279 Length=131035 Score = 118 bits (130), Expect = 4e-21 Identities = 169/237 (71%), Gaps = 12/237 (5%) Strand=Plus/Minus Query 451322 GCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCA 451381 ||||| ||||||||||| |||||||||||||||||||| || || || || || ||||| Sbjct 8644 GCAGTTATTACTGTTCCAGCTTATTTCAATGATGCACAGCGTCAGGCCACCAAGGATGCT 8585 Query 451382 GGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTA 451441 || | |||||||| | |||| | || || || |||||||||||||||||||| Sbjct 8584 GGTCGCATTGCTGGCCTTGATGTCGAAAGGATCATCAACGAACCTACAGCAGCTGCTCTG 8525 Query 451442 GCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTT 451501 |||||||| | ||| | || || || | |||| ||| |||||| || Sbjct 8524 TCATATGGA--ATGAACAACA--------AGGAGGGATTAATA--GCAGTCTTTGATCTT 8477 Query 451502 GGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTA 451558 || ||||||||| ||||| |||| | || || | |||| || ||||| ||| Sbjct 8476 GGAGGAGGAACTTTTGATATTTCTATCCTGGAGATCTCAAATGGAGTTTTTGAGGTA 8420 Score = 113 bits (124), Expect = 2e-19 Identities = 148/204 (73%), Gaps = 12/204 (6%) Strand=Plus/Minus Query 451322 GCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCA 451381 ||||| ||||||||||| |||||||||||||||||||| || || || || || ||||| Sbjct 11622 GCAGTTATTACTGTTCCAGCTTATTTCAATGATGCACAGCGTCAGGCCACCAAGGATGCT 11563 Query 451382 GGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTA 451441 || | |||||||| | |||| | || || || |||||||| ||||||||||| Sbjct 11562 GGTCGCATTGCTGGCCTTGATGTCGAAAGGATCATCAACGAACCTACTGCAGCTGCTCTG 11503 Query 451442 GCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTT 451501 |||||||| | ||| | || || || | |||| ||| |||||| || Sbjct 11502 TCATATGGA--ATGAACAACA--------AGGAGGGATTAATA--GCAGTCTTTGATCTT 11455 Query 451502 GGTGGAGGAACTCATGATACTTCT 451525 || ||||||||| ||||| |||| Sbjct 11454 GGAGGAGGAACTTTTGATATTTCT 11431 >seq1019 Length=149045 Score = 118 bits (130), Expect = 4e-21 Identities = 149/204 (73%), Gaps = 12/204 (6%) Strand=Plus/Minus Query 451322 GCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCA 451381 ||||| ||||||||||| |||||||||||||||||||| || || || || || ||||| Sbjct 64051 GCAGTGATTACTGTTCCAGCTTATTTCAATGATGCACAGCGTCAGGCCACAAAGGATGCT 63992 Query 451382 GGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTA 451441 || | |||||||| | |||| | || || || |||||||||||||||||||| Sbjct 63991 GGTCGCATTGCTGGCCTTGATGTCGAAAGGATCATCAACGAACCTACAGCAGCTGCTCTG 63932 Query 451442 GCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTT 451501 |||||||| | ||| | || || || | |||| ||| |||||| || Sbjct 63931 TCATATGGA--ATGAACAACA--------AGGAGGGATTAATA--GCAGTCTTTGATCTT 63884 Query 451502 GGTGGAGGAACTCATGATACTTCT 451525 || ||||||||| ||||| |||| Sbjct 63883 GGAGGAGGAACTTTTGATATTTCT 63860 Score = 118 bits (130), Expect = 4e-21 Identities = 149/204 (73%), Gaps = 12/204 (6%) Strand=Plus/Minus Query 451322 GCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCA 451381 ||||| ||||||||||| |||||||||||||||||||| || || || || || ||||| Sbjct 66924 GCAGTTATTACTGTTCCAGCTTATTTCAATGATGCACAGCGTCAGGCCACCAAGGATGCT 66865 Query 451382 GGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTA 451441 || | |||||||| | |||| | || || || |||||||||||||||||||| Sbjct 66864 GGTCGCATTGCTGGCCTTGATGTCGAAAGGATCATCAACGAACCTACAGCAGCTGCTCTG 66805 Query 451442 GCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTT 451501 |||||||| | ||| | || || || | |||| ||| |||||| || Sbjct 66804 TCATATGGA--ATGAACAACA--------AGGAGGGATTAATA--GCAGTCTTTGATCTT 66757 Query 451502 GGTGGAGGAACTCATGATACTTCT 451525 || ||||||||| ||||| |||| Sbjct 66756 GGAGGAGGAACTTTTGATATTTCT 66733 >seq2485 Length=82450 Score = 100 bits (110), Expect = 1e-15 Identities = 130/180 (72%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 451271 ACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATT 451330 || || |||||||| ||||||||| || | || | || | | ||||| || Sbjct 32403 ACCAAGATGAAAGAGACAGCAGAAGCTTACCTCGGCAAATCTGTCTCGAAGGCAGTGGTT 32462 Query 451331 ACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATT 451390 |||||||| || |||||||| ||||| || || ||||| || || |||||||| | ||| Sbjct 32463 ACTGTTCCAGCATATTTCAACGATGCTCAGCGTCAAGCTACAAAGGATGCAGGCCGCATT 32522 Query 451391 GCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGA 451450 ||||| | | ||| | || || ||||| || |||||||||||||| |||||||| Sbjct 32523 GCTGGACTTGAAGTTGAAAGGATCATCAATGAGCCGACAGCAGCTGCTCTGTCATATGGA 32582 >seq663 Length=181307 Score = 84.2 bits (92), Expect = 9e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || ||||||||||| || || || || || || || || ||| Sbjct 106031 ATGCAGATCTTCGTCAAGACCCTGACTGGTAAGACCATCACCCTGGAGGTGGAGTCTTCT 105972 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | |||||| | | || || || || || ||||| || ||||| || || || Sbjct 105971 GACACCATTGACAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 105912 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||| | || || | || || || || || ||||| | || |||||||||| || Sbjct 105911 CAGCGTCTTATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGTACCCTGGCGGATTACAAC 105852 Query 391230 ATTGATAAGGATGCAACACTTCAC 391253 || | ||||| | || || ||| Sbjct 105851 ATCCAGAAGGAATCCACTCTCCAC 105828 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975366967237364