Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq3634 145 9e-30 seq1443 145 9e-30 seq2924 127 3e-24 seq3299 118 1e-21 seq4632 107 2e-18 seq5229 102 1e-16 >seq3634 Length=55208 Score = 145 bits (160), Expect = 9e-30 Identities = 121/148 (82%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 102173 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 102232 ||| || ||||| || |||| || || || || ||||| ||||||||||| || ||||| Sbjct 695 CTTCGCCGAGCGCCTAGTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCCTT 636 Query 102233 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 102292 |||||| || | |||||||||||||| || |||||||| || ||| |||||||||||| Sbjct 635 CTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGCCTCACCTTCTCCAACGA 576 Query 102293 GCTTATCTCTCGTGACGAGGGACTCCAC 102320 ||| ||||| || |||||||| |||||| Sbjct 575 GCTCATCTCCCGCGACGAGGGCCTCCAC 548 >seq1443 Length=121453 Score = 145 bits (160), Expect = 9e-30 Identities = 121/148 (82%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 102173 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 102232 ||| || ||||| || |||| || || || || ||||| ||||||||||| || ||||| Sbjct 25827 CTTCGCCGAGCGCCTAGTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCCTT 25768 Query 102233 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 102292 |||||| || | |||||||||||||| || |||||||| || ||| |||||||||||| Sbjct 25767 CTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGCCTCACCTTCTCCAACGA 25708 Query 102293 GCTTATCTCTCGTGACGAGGGACTCCAC 102320 ||| ||||| || |||||||| |||||| Sbjct 25707 GCTCATCTCCCGCGACGAGGGCCTCCAC 25680 >seq2924 Length=71133 Score = 127 bits (140), Expect = 3e-24 Identities = 253/371 (68%), Gaps = 18/371 (5%) Strand=Plus/Minus Query 15888 TCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCGGCG 15947 ||||| || || || | ||| | || ||| | ||| ||| | | || || || || Sbjct 66257 TCAAATCGTCCAGGTCTAAGCAAGGCTGAATCCAAGATGTCAGCTCTGTTAGTGGCAGCA 66198 Query 15948 ATGACAACAATACCTGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTTAATA 16007 || |||| || || || | ||||||||||||||||| |||||||| || || | | Sbjct 66197 ATAACAATGATTCCAGTGTTCCCCTCAAAACCATCCATCTCAGTCAAAAGTTGATTCAGA 66138 Query 16008 GTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTG------CGTTGCTTTCCC 16061 || || |||| ||||||||| | ||||||| || | | |||| |||| Sbjct 66137 GTCTGCTCCCTTTCATCATTTCC------ACCACCAATACCGGTTCCTCTTTGCCTTCCA 66084 Query 16062 ACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTC--AA 16119 || ||||| || ||||||| || || ||||| || | ||| | | |||| || Sbjct 66083 ACAGCATCGATTTCATCAACAAACACTATGCAAGG--GGCGTTCTCCTTGGCCTTCTTAA 66026 Query 16120 AGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGG 16179 ||||||| || || || ||| || ||||| ||||||||||||||||| | | ||| Sbjct 66025 AGAGATCACGAACCCGGGAGGCACCAACACCGACAAACATCTCCACAAACTCAGATCCGG 65966 Query 16180 AACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTA 16238 | |||| || ||| || ||| || ||| || ||||| || ||| || | ||||||| Sbjct 65965 -ATATTGAGAAGAAAGGCACACCAGCTTCTCCTGCAATTGCCTTGGCAAGCAAAGTCTTA 65907 Query 16239 CCCGTACCTGG 16249 || || || || Sbjct 65906 CCAGTTCCAGG 65896 Score = 123 bits (136), Expect = 3e-23 Identities = 235/342 (69%), Gaps = 18/342 (5%) Strand=Plus/Minus Query 15917 ATCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACCTGTTTCGTTATCAAA 15976 ||| | ||| ||| | | || || ||||| || |||| || || || | ||||| Sbjct 65674 ATCCAAGATGTCAGCTCTGTTAGTGGCGGCAATAACAATGATTCCAGTGTTCCCCTCAAA 65615 Query 15977 ACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 16036 |||||||||||| ||||| || || || | ||| || |||| ||||||||| | Sbjct 65614 ACCATCCATCTCAGTCAATAGTTGATTCAGAGTCTGCTCCCTTTCATCATTTCC------ 65561 Query 16037 ACCACCAGCACTG------CGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGAT 16090 ||||||| || | | |||| |||| || ||||| || ||||||| || || || Sbjct 65560 ACCACCAATACCGGTTCCTCTTTGCCTTCCAACAGCATCGATTTCATCAACAAACACTAT 65501 Query 16091 GCATGGTTGATTTTCGCGAGCGACTTC--AAAGAGATCCCGTACACGCTTGGCGCCCACA 16148 ||| || || || || |||| ||||||||| || || || ||| || ||| Sbjct 65500 GCAAGGGGCGTTCTCCTTGGC--CTTCTTAAAGAGATCACGAACCCGGGAGGCACCAACA 65443 Query 16149 CCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTC 16207 || ||||||||||||||||| | | ||| | |||| || ||| || ||| || ||| Sbjct 65442 CCGACAAACATCTCCACAAACTCAGATCCGG-ATATTGAGAAGAAAGGCACACCAGCTTC 65384 Query 16208 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249 || ||||| || ||| || | ||||||||| || || || Sbjct 65383 TCCTGCAATTGCCTTGGCAAGCAAAGTCTTACCAGTTCCAGG 65342 >seq3299 Length=62565 Score = 118 bits (130), Expect = 1e-21 Identities = 251/370 (68%), Gaps = 16/370 (4%) Strand=Plus/Plus Query 15888 TCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCGGCG 15947 ||||| || || || | ||| | || ||| | ||| ||| | | || || || || Sbjct 1926 TCAAATCGTCCAGGTCTAAGCAAGGCTGAATCCAAGATGTCAGCTCTGTTAGTGGCAGCA 1985 Query 15948 ATGACAACAATACCTGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTTAATA 16007 || |||| || || || | ||||||||||||||||| |||||||| || || | | Sbjct 1986 ATAACAATGATTCCAGTGTTCCCCTCAAAACCATCCATCTCAGTCAAAAGTTGATTCAGA 2045 Query 16008 GTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTG------CGTTGCTTTCCC 16061 || || |||| ||||||||| | ||||||| || | | |||| |||| Sbjct 2046 GTCTGCTCCCTTTCATCATTTCC------ACCACCAATACCGGTTCCTCTTTGCCTTCCA 2099 Query 16062 ACGGCATCAATCTCATCAATGAAGACGATGC-ATGGTTGATTTTCGCGAGCGACTTCAAA 16120 || ||||| || ||||||| || || |||| | || | | | | | | ||| ||| Sbjct 2100 ACAGCATCGATTTCATCAACAAACACTATGCAAGGGGCGTTCTCCTTGGCCTTCTTGAAA 2159 Query 16121 GAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA 16180 ||||| || || || ||| || ||||| ||||||||||||||||| | | | || Sbjct 2160 -AGATCACGAACCCGGGAGGCACCAACACCGACAAACATCTCCACAAACTCAGATCCCGA 2218 Query 16181 ACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTAC 16239 | |||| || ||| || ||| || ||| || ||||| || ||| || | |||||||| Sbjct 2219 A-ATTGAGAAGAAAGGCACACCAGCTTCTCCTGCAATTGCCTTGGCAAGCAAAGTCTTAC 2277 Query 16240 CCGTACCTGG 16249 | || || || Sbjct 2278 CAGTTCCAGG 2287 >seq4632 Length=39362 Score = 107 bits (118), Expect = 2e-18 Identities = 218/324 (67%), Gaps = 20/324 (6%) Strand=Plus/Plus Query 15975 AAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 16034 || |||||||||||||||| | ||||||||| || || |||| ||||| || | Sbjct 26452 AATCCATCCATCTCTGTCAGCAACTGGTTAATGGTCTGCTCCCTCTCATCGTTTCC---- 26507 Query 16035 ATACCACCA------GCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACG 16088 ||||||| |||| || ||| | || || ||||||||||||||||||||||| Sbjct 26508 --ACCACCAAGCCCGGCACCACGCTGCCTCCCAACAGCATCAATCTCATCAATGAAGACA 26565 Query 16089 ATGCATGG----TTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCC 16144 ||||| || ||| || || | |||||||| || || || | ||| || Sbjct 26566 ATGCAGGGCGCCTTGGCCTTGGCCTTC----TCAAAGAGGTCACGCACTCTGGAGGCACC 26621 Query 16145 CACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGA 16204 ||||| ||||| | ||| || || | || || | || || ||| || || | Sbjct 26622 GACACCGACAAAGAGCTCGACGAACTCTGACGCAGCGCAGGAGAAGAACGGCACCCCGGC 26681 Query 16205 TTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAG 16264 || || || | ||| || ||||| ||||| ||||| || || ||| || ||||||| Sbjct 26682 CTCTCCGGCGACGGCACGCGCGAGGAGAGTTTTACCTGTCCCAGGCGGGCCGACGAGGAG 26741 Query 16265 GGCACCTCGTGGAATCTTGGCGCC 16288 | || ||| |||||||| || Sbjct 26742 GCAGCCCTTTGGGATCTTGGCTCC 26765 Score = 84.2 bits (92), Expect = 3e-11 Identities = 95/128 (74%), Gaps = 12/128 (9%) Strand=Plus/Plus Query 15975 AAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 16034 || |||||||||||||||| | ||||||||| || || |||| ||||| || | Sbjct 25586 AATCCATCCATCTCTGTCAGCAACTGGTTAATGGTCTGCTCCCTCTCATCGTTTCC---- 25641 Query 16035 ATACCACCA------GCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACG 16088 ||||||| |||| || ||| | || || ||||||||||||||||||||||| Sbjct 25642 --ACCACCAAGCCCGGCACCACGCTGCCTCCCAACAGCATCAATCTCATCAATGAAGACA 25699 Query 16089 ATGCATGG 16096 ||||| || Sbjct 25700 ATGCAGGG 25707 >seq5229 Length=31845 Score = 102 bits (112), Expect = 1e-16 Identities = 217/324 (67%), Gaps = 20/324 (6%) Strand=Plus/Plus Query 15975 AAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 16034 || |||||||||||||||| | ||||||||| || || |||| ||||| || | Sbjct 26521 AATCCATCCATCTCTGTCAGCAACTGGTTAATGGTCTGCTCCCTCTCATCGTTTCC---- 26576 Query 16035 ATACCACCA------GCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACG 16088 ||||||| |||| || ||| | || || ||||||||||||||||||||||| Sbjct 26577 --ACCACCAAGCCCGGCACCACGCTGCCTCCCAACAGCATCAATCTCATCAATGAAGACA 26634 Query 16089 ATGCATGG----TTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCC 16144 ||||| || ||| || || | |||||||| || || || | ||| || Sbjct 26635 ATGCAGGGCGCCTTGGCCTTGGCCTTC----TCAAAGAGGTCACGCACTCTGGAGGCACC 26690 Query 16145 CACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGA 16204 ||||| ||||| | ||| || || | | |||| || || ||| || || | Sbjct 26691 GACACCGACAAAGAGCTCGACGAACTCAGACGCGGCGCAGGAGAAGAACGGCACCCCGGC 26750 Query 16205 TTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAG 16264 || || || | ||| || ||||| ||||| ||||| || || || || ||||||| Sbjct 26751 CTCTCCGGCGACGGCACGCGCGAGGAGAGTTTTACCTGTCCCAGGTGGGCCGACGAGGAG 26810 Query 16265 GGCACCTCGTGGAATCTTGGCGCC 16288 | || ||| |||||||| || Sbjct 26811 GCAGCCCTTTGGGATCTTGGCTCC 26834 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620634677915760