Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq4632 136 5e-27 seq5229 131 2e-25 seq480 116 4e-21 seq3199 114 2e-20 seq3634 102 1e-16 seq1443 102 1e-16 seq6216 87.8 2e-12 seq1932 87.8 2e-12 seq1442 82.4 9e-11 >seq4632 Length=39362 Score = 136 bits (150), Expect = 5e-27 Identities = 314/471 (67%), Gaps = 8/471 (2%) Strand=Plus/Plus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 |||||||| | ||||| ||||| || ||| || |||| ||| | |||||| ||| Sbjct 26362 CGATCGAACCTTCCTGGACGGAGAAGGGCAGAGTCCAGAACATCAGGCCTGTTTGTCGCG 26421 Query 11563 GCAATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTG 11622 |||| || | | ||| | | | |||| || ||||| ||||| || | |||||| Sbjct 26422 GCAAGCACGATGACACCACTGTTACCAGCGAATCCATCCATCTCTGTCAGCAACTGGTTA 26481 Query 11623 ATCGTCTGTTCACGCTCATCGTTGGAGGGCAT-ACCA---CCTGCCGAACGCTTCTTACC 11678 || ||||| || | ||||||||| || |||| || || ||||| | | || Sbjct 26482 ATGGTCTGCTCCCTCTCATCGTTTC----CACCACCAAGCCCGGCACCACGCTGCCTCCC 26537 Query 11679 GACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCGAA 11738 ||||| ||||||||||| ||||| || || || || ||||| |||| || || Sbjct 26538 AACAGCATCAATCTCATCAATGAAGACAATGCAGGGCGCCTTGGCCTTGGCCTTCTCAAA 26597 Query 11739 AAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCAGA 11798 || ||||| || | || || ||||| || || | ||| ||||| | || |||| Sbjct 26598 GAGGTCACGCACTCTGGAGGCACCGACACCGACAAAGAGCTCGACGAACTCTGACGCAGC 26657 Query 11799 ACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACC 11858 || | ||| || || | ||| || |||| ||| || ||||||||||| ||||| Sbjct 26658 GCAGGAGAAGAACGGCACCCCGGCCTCTCCGGCGACGGCACGCGCGAGGAGAGTTTTACC 26717 Query 11859 CGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCACTTCCAAAGTA 11918 || ||||| | || |||| ||| ||| ||||||||||| || | ||| Sbjct 26718 TGTCCCAGGCGGGCCGACGAGGAGGCAGCCCTTTGGGATCTTGGCTCCGAGCGCGGTGTA 26777 Query 11919 GCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGC 11969 || || ||||||||||| || || | ||||| || || |||||| Sbjct 26778 CTTGTCGGGGTTCTTGAGGAAATCAACGACCTCCTGCAGCTCGAGCTTGGC 26828 Score = 82.4 bits (90), Expect = 9e-11 Identities = 149/216 (69%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 |||||||| | ||||| ||||| || ||| || |||| ||| | |||||| ||| Sbjct 25496 CGATCGAACCTTCCTGGACGGAGAAGGGCAGAGTCCAGAACATCAGGCCTGTTTGTCGCG 25555 Query 11563 GCAATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTG 11622 |||| || | | ||| | | | |||| || ||||| ||||| || | |||||| Sbjct 25556 GCAAGCACGATGACACCACTGTTACCAGCGAATCCATCCATCTCTGTCAGCAACTGGTTA 25615 Query 11623 ATCGTCTGTTCACGCTCATCGTTGGAGGGCAT-ACCA---CCTGCCGAACGCTTCTTACC 11678 || ||||| || | ||||||||| || |||| || || ||||| | | || Sbjct 25616 ATGGTCTGCTCCCTCTCATCGTTTC----CACCACCAAGCCCGGCACCACGCTGCCTCCC 25671 Query 11679 GACAGCGTCAATCTCATCGATGAATACGATACACGG 11714 ||||| ||||||||||| ||||| || || || || Sbjct 25672 AACAGCATCAATCTCATCAATGAAGACAATGCAGGG 25707 >seq5229 Length=31845 Score = 131 bits (144), Expect = 2e-25 Identities = 313/471 (66%), Gaps = 8/471 (2%) Strand=Plus/Plus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 |||||||| | ||||| ||||| || ||| || || | |||| | |||||| ||| Sbjct 26431 CGATCGAACCTTCCTGGCCGGAGAAGTGCAGAGTCCAGGACATCGGGCCTGTTTGTCGCG 26490 Query 11563 GCAATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTG 11622 |||| || | | ||| | | | |||| || ||||| ||||| || | |||||| Sbjct 26491 GCAAGCACGATGACACCACTGTTACCAGCGAATCCATCCATCTCTGTCAGCAACTGGTTA 26550 Query 11623 ATCGTCTGTTCACGCTCATCGTTGGAGGGCAT-ACCA---CCTGCCGAACGCTTCTTACC 11678 || ||||| || | ||||||||| || |||| || || ||||| | | || Sbjct 26551 ATGGTCTGCTCCCTCTCATCGTTTC----CACCACCAAGCCCGGCACCACGCTGCCTCCC 26606 Query 11679 GACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCGAA 11738 ||||| ||||||||||| ||||| || || || || ||||| |||| || || Sbjct 26607 AACAGCATCAATCTCATCAATGAAGACAATGCAGGGCGCCTTGGCCTTGGCCTTCTCAAA 26666 Query 11739 AAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCAGA 11798 || ||||| || | || || ||||| || || | ||| ||||| | | || | Sbjct 26667 GAGGTCACGCACTCTGGAGGCACCGACACCGACAAAGAGCTCGACGAACTCAGACGCGGC 26726 Query 11799 ACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACC 11858 || | ||| || || | ||| || |||| ||| || ||||||||||| ||||| Sbjct 26727 GCAGGAGAAGAACGGCACCCCGGCCTCTCCGGCGACGGCACGCGCGAGGAGAGTTTTACC 26786 Query 11859 CGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCACTTCCAAAGTA 11918 || ||||||| || |||| ||| ||| ||||||||||| || | ||| Sbjct 26787 TGTCCCAGGTGGGCCGACGAGGAGGCAGCCCTTTGGGATCTTGGCTCCGAGCGCGGTGTA 26846 Query 11919 GCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGC 11969 || || ||||||||||| || || | ||||| || || |||||| Sbjct 26847 CTTGTCGGGGTTCTTGAGGAAATCAACGACCTCCTGCAGCTCGAGCTTGGC 26897 >seq480 Length=206833 Score = 116 bits (128), Expect = 4e-21 Identities = 317/475 (67%), Gaps = 13/475 (3%) Strand=Plus/Plus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 || ||||| | || |||||||| || || | || || || ||| ||||| || ||| Sbjct 159007 CGGTCGAACCTCCCGGGGCGGAGCAGCGCGGCGTCGAGGATGTCGGGCCGGTTGGTGGCG 159066 Query 11563 GCAATGACTACAATGCCAGTCTCATTGTCG---AAACCGTCCATTTCTGTGAGAAGCTGG 11619 || ||||| | | ||| | | | | || || |||||||| || ||||| |||||| Sbjct 159067 GCGATGACGATGACGCCGCTGTTGTCGCCGGCGAACCCGTCCATCTCCGTGAGCAGCTGG 159126 Query 11620 TTGATCGTCTGTTCACGCTCATCGTTGGAGG-GC--ATACCACCTGCCGAACGCTTCTTA 11676 |||| |||||| || ||||| ||||| | || || || | |||| |||| | Sbjct 159127 TTGAGCGTCTGCTCCCGCTCGTCGTTCCCGCCGCCGATGCCGGC-GCCG--CGCTGCCGG 159183 Query 11677 CCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCG 11736 || || ||||| ||||| |||| ||| || | ||||| | ||| || | ||| Sbjct 159184 CCCACGGCGTCGATCTCGTCGACGAACACCAGGCACGGCGCGGCGGCCTTGGCGCGGTCG 159243 Query 11737 AAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCA 11796 || || || || || ||| ||| || || || ||||||||||| | ||| | | | Sbjct 159244 AAGAGGTCGCGCACCCGCGACGCGCCCACGCCCACGAACATCTCGATGAACTCCG-ACCC 159302 Query 11797 GAACACTGA-ATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTT 11855 | ||| || | |||||| || | |||||| |||||||| || || || ||||| Sbjct 159303 GGACAGCGAGAAGAAGGGCACCCCGGCCTCACCCGCGATGGCCTTCGCCAGCAGCGTCTT 159362 Query 11856 ACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGC-ACCACTTCCAA 11914 ||||| || || | || | |||| |||| ||||||| || |||| || Sbjct 159363 CCCCGTGCCCGGCGGGCCCACCCGAAGCACGCCCTTGGGGATCCGCGCGCCCACCGCC-G 159421 Query 11915 AGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGC 11969 | | ||| ||| ||||||||| | ||| ||||||| | |||| |||||| Sbjct 159422 TGAACTTCTCCGGCGACTTGAGGAACTGCACGATCTCCTGGAAGTCCTGCTTGGC 159476 >seq3199 Length=64821 Score = 114 bits (126), Expect = 2e-20 Identities = 316/474 (67%), Gaps = 14/474 (3%) Strand=Plus/Plus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 |||||||| | || || ||||| || || | || || || ||| ||||| || || Sbjct 33928 CGATCGAACCTCCCGGGCCGGAGAAGCGCCGCGTCGAGGATGTCGGGCCGGTTGGTTGCT 33987 Query 11563 GCAATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTG 11622 || ||||| | | ||| | || | |||| |||||||| || ||||| ||||||||| Sbjct 33988 GCGATGACGATGACGCCGCTGTCGCCGGCGAACCCGTCCATCTCCGTGAGCAGCTGGTTG 34047 Query 11623 ATCGTCTGTTCACGCTCATCGTTGGAGG-GC--ATACCACCTGCCGAACGCTTCTTACCG 11679 | |||||| || ||||| ||||| | || || || | |||| |||| | ||| Sbjct 34048 AGCGTCTGCTCCCGCTCGTCGTTCCCGCCGCCGATGCCCGC-GCCG--CGCTGCCGTCCG 34104 Query 11680 ACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCGAAA 11739 || ||||| ||||| |||| ||| |||| ||||| | ||| ||| | ||||| Sbjct 34105 ACGGCGTCGATCTCGTCGACGAACACGAGGCACGGCGCGGCGGCCTTGGCCCGGTCGAAG 34164 Query 11740 AGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGG--CAG 11797 || || || || ||| ||| || || || ||||||||||| | ||| | ||| | | Sbjct 34165 AGGTCCCGCACCCGCGACGCGCCCACTCCCACGAACATCTCGATGAACT---CGGACCCG 34221 Query 11798 AACACTGA-ATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTA 11856 ||| || | |||||| || | || || ||||| || || || || ||||| Sbjct 34222 GACAGCGAGAAGAAGGGCACCCCGGCTTCCCCCGCGATCGCCTTGGCCAGCAGCGTCTTC 34281 Query 11857 CCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGAT-CTTGGCACCACTTCCAAA 11915 ||||| || || | || | || || |||| |||||| | | | |||| || Sbjct 34282 CCCGTGCCCGGCGGGCCCACCAGCAGCACGCCCTTGGGGATCCGCGCCCCCACCGCC-GC 34340 Query 11916 GTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGC 11969 | | ||| ||| |||||||| | ||| ||||||| | |||| ||| || Sbjct 34341 GAACTTCTCCGGCGATTTGAGGAACTGCACGATCTCCTGGAAGTCCTGCTTCGC 34394 >seq3634 Length=55208 Score = 102 bits (112), Expect = 1e-16 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 || || || || || || ||||||||||| || |||| || || |||||||| || Sbjct 549 TGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGGCCG 608 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | ||||| ||||| |||||||| || || || || |||||||||||||| || ||| Sbjct 609 CGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTCGACGCAG 668 Query 119628 GCGAAAGCGAATAGACGCTCAGCAAA 119653 ||||| |||| ||| ||||| || || Sbjct 669 GCGAAGGCGACTAGGCGCTCGGCGAA 694 >seq1443 Length=121453 Score = 102 bits (112), Expect = 1e-16 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 || || || || || || ||||||||||| || |||| || || |||||||| || Sbjct 25681 TGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGGCCG 25740 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | ||||| ||||| |||||||| || || || || |||||||||||||| || ||| Sbjct 25741 CGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTCGACGCAG 25800 Query 119628 GCGAAAGCGAATAGACGCTCAGCAAA 119653 ||||| |||| ||| ||||| || || Sbjct 25801 GCGAAGGCGACTAGGCGCTCGGCGAA 25826 >seq6216 Length=21153 Score = 87.8 bits (96), Expect = 2e-12 Identities = 99/130 (76%), Gaps = 2/130 (2%) Strand=Plus/Minus Query 11760 TCCAACACCTACGAACATCTCAACGAAGTTTGCGGCAGAACACTGA-ATGAAGGGAACAT 11818 ||||||||| ||||||||||| | ||||| || ||||| | || | |||||| |||| Sbjct 11373 TCCAACACCAACGAACATCTCCATGAAGTCTGAACCAGAA-ATAGACAAGAAGGGCACAT 11315 Query 11819 TAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGA 11878 |||||| || ||| | ||| |||||||| || || ||||| ||||| | |||| | | Sbjct 11314 CAGACTCTCCTGCGGTAGCTTTGGCGAGGAGCGTTTTTCCCGTGCCAGGGGGACCAACAA 11255 Query 11879 GAAGGGCGCC 11888 |||| || || Sbjct 11254 GAAGAGCACC 11245 >seq1932 Length=101031 Score = 87.8 bits (96), Expect = 2e-12 Identities = 99/130 (76%), Gaps = 2/130 (2%) Strand=Plus/Minus Query 11760 TCCAACACCTACGAACATCTCAACGAAGTTTGCGGCAGAACACTGA-ATGAAGGGAACAT 11818 ||||||||| ||||||||||| | ||||| || ||||| | || | |||||| |||| Sbjct 75887 TCCAACACCAACGAACATCTCCATGAAGTCTGAACCAGAA-ATAGACAAGAAGGGCACAT 75829 Query 11819 TAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGA 11878 |||||| || ||| | ||| |||||||| || || ||||| ||||| | |||| | | Sbjct 75828 CAGACTCTCCTGCGGTAGCTTTGGCGAGGAGCGTTTTTCCCGTGCCAGGGGGACCAACAA 75769 Query 11879 GAAGGGCGCC 11888 |||| || || Sbjct 75768 GAAGAGCACC 75759 >seq1442 Length=121472 Score = 82.4 bits (90), Expect = 9e-11 Identities = 80/103 (78%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 109744 CGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGT 109803 ||||| ||| ||||||| ||||||||||| || || || |||||||| || || || Sbjct 114724 CGTCGACTGTAAATGTTAGATGTGTAGGGTTCAAAGCATTCGTTGTTGCCAAGAATCTGA 114665 Query 109804 GCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTC 109846 ||||||||| |||||||| ||||| | |||||| ||||| Sbjct 114664 CTAGTGGAAGCAGTGGGCATTGGAGCAACAAGAAGAGAGTTTC 114622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588873790577400