Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq2924 138 1e-27 seq3299 129 7e-25 seq4632 123 3e-23 seq3634 123 3e-23 seq1443 123 3e-23 seq5229 114 2e-20 seq1932 95.1 1e-14 seq837 82.4 9e-11 seq737 82.4 9e-11 >seq2924 Length=71133 Score = 138 bits (152), Expect = 1e-27 Identities = 253/369 (69%), Gaps = 14/369 (4%) Strand=Plus/Minus Query 9195 TCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCG 9254 ||||| || || || | ||| | || ||| | ||| ||| | | || || || || Sbjct 66257 TCAAATCGTCCAGGTCTAAGCAAGGCTGAATCCAAGATGTCAGCTCTGTTAGTGGCAGCA 66198 Query 9255 ATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATA 9314 || |||| || || || | ||||||||||||||||| ||||||||||| || | | Sbjct 66197 ATAACAATGATTCCAGTGTTCCCCTCAAAACCATCCATCTCAGTCAAAAGTTGATTCAGA 66138 Query 9315 GTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTG------CGTTGCTTTCCC 9368 || || |||| ||||||||| | ||||||| || | | |||| |||| Sbjct 66137 GTCTGCTCCCTTTCATCATTTCC------ACCACCAATACCGGTTCCTCTTTGCCTTCCA 66084 Query 9369 ACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAG 9428 || ||||| || ||||||| || || || || || || || ||| | | |||| Sbjct 66083 ACAGCATCGATTTCATCAACAAACACTATGCAAGGGGCGTTCTCCTTGGCCTTCTTAAAG 66024 Query 9429 AGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAA 9488 ||||| ||||||| ||| || ||||| ||||||||||||||||| | | ||| | Sbjct 66023 AGATCACGAACCCGGGAGGCACCAACACCGACAAACATCTCCACAAACTCAGATCCGG-A 65965 Query 9489 CATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 9547 |||| || ||| || ||| || ||| || ||||| || ||| || | ||||||||| Sbjct 65964 TATTGAGAAGAAAGGCACACCAGCTTCTCCTGCAATTGCCTTGGCAAGCAAAGTCTTACC 65905 Query 9548 CGTACCTGG 9556 || || || Sbjct 65904 AGTTCCAGG 65896 Score = 134 bits (148), Expect = 2e-26 Identities = 235/340 (69%), Gaps = 14/340 (4%) Strand=Plus/Minus Query 9224 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAA 9283 ||| | ||| ||| | | || || ||||| || |||| || || || | ||||| Sbjct 65674 ATCCAAGATGTCAGCTCTGTTAGTGGCGGCAATAACAATGATTCCAGTGTTCCCCTCAAA 65615 Query 9284 ACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 9343 |||||||||||| ||||| ||||| || | ||| || |||| ||||||||| | Sbjct 65614 ACCATCCATCTCAGTCAATAGTTGATTCAGAGTCTGCTCCCTTTCATCATTTCC------ 65561 Query 9344 ACCACCAGCACTG------CGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAAT 9397 ||||||| || | | |||| |||| || ||||| || ||||||| || || || Sbjct 65560 ACCACCAATACCGGTTCCTCTTTGCCTTCCAACAGCATCGATTTCATCAACAAACACTAT 65501 Query 9398 ACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACC 9457 || || || || ||| | | ||||||||| ||||||| ||| || ||||| Sbjct 65500 GCAAGGGGCGTTCTCCTTGGCCTTCTTAAAGAGATCACGAACCCGGGAGGCACCAACACC 65441 Query 9458 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCAC 9516 ||||||||||||||||| | | ||| | |||| || ||| || ||| || ||| | Sbjct 65440 GACAAACATCTCCACAAACTCAGATCCGG-ATATTGAGAAGAAAGGCACACCAGCTTCTC 65382 Query 9517 CCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 | ||||| || ||| || | ||||||||| || || || Sbjct 65381 CTGCAATTGCCTTGGCAAGCAAAGTCTTACCAGTTCCAGG 65342 >seq3299 Length=62565 Score = 129 bits (142), Expect = 7e-25 Identities = 251/369 (68%), Gaps = 14/369 (4%) Strand=Plus/Plus Query 9195 TCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCG 9254 ||||| || || || | ||| | || ||| | ||| ||| | | || || || || Sbjct 1926 TCAAATCGTCCAGGTCTAAGCAAGGCTGAATCCAAGATGTCAGCTCTGTTAGTGGCAGCA 1985 Query 9255 ATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATA 9314 || |||| || || || | ||||||||||||||||| ||||||||||| || | | Sbjct 1986 ATAACAATGATTCCAGTGTTCCCCTCAAAACCATCCATCTCAGTCAAAAGTTGATTCAGA 2045 Query 9315 GTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTG------CGTTGCTTTCCC 9368 || || |||| ||||||||| | ||||||| || | | |||| |||| Sbjct 2046 GTCTGCTCCCTTTCATCATTTCC------ACCACCAATACCGGTTCCTCTTTGCCTTCCA 2099 Query 9369 ACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAG 9428 || ||||| || ||||||| || || || || || || || ||| | | || Sbjct 2100 ACAGCATCGATTTCATCAACAAACACTATGCAAGGGGCGTTCTCCTTGGCCTTCTTGAAA 2159 Query 9429 AGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAA 9488 ||||| ||||||| ||| || ||||| ||||||||||||||||| | | | ||| Sbjct 2160 AGATCACGAACCCGGGAGGCACCAACACCGACAAACATCTCCACAAACTCAGATCCCGAA 2219 Query 9489 CATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 9547 |||| || ||| || ||| || ||| || ||||| || ||| || | ||||||||| Sbjct 2220 -ATTGAGAAGAAAGGCACACCAGCTTCTCCTGCAATTGCCTTGGCAAGCAAAGTCTTACC 2278 Query 9548 CGTACCTGG 9556 || || || Sbjct 2279 AGTTCCAGG 2287 >seq4632 Length=39362 Score = 123 bits (136), Expect = 3e-23 Identities = 273/410 (67%), Gaps = 12/410 (3%) Strand=Plus/Plus Query 9192 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9251 ||||| || | |||||||| || || || || || | |||| | || |||||| Sbjct 26362 CGATCGAACCTTCCTGGACGGAGAAGGGCAGAGTCCAGAACATCAGGCCTGTTTGTCGCG 26421 Query 9252 GCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9311 || | || | | ||| | | | | | || |||||||||||||||| | |||||| Sbjct 26422 GCAAGCACGATGACACCACTGTTACCAGCGAATCCATCCATCTCTGTCAGCAACTGGTTA 26481 Query 9312 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCA------GCACTGCGTTGCTTT 9365 || || || |||| ||||| || | ||||||| |||| || ||| | Sbjct 26482 ATGGTCTGCTCCCTCTCATCGTTTCC------ACCACCAAGCCCGGCACCACGCTGCCTC 26535 Query 9366 CCCACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCA 9425 || || |||||||||||||||||||||||||| || || || | ||| | ||| Sbjct 26536 CCAACAGCATCAATCTCATCAATGAAGACAATGCAGGGCGCCTTGGCCTTGGCCTTCTCA 26595 Query 9426 AAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCG 9485 ||||| || || || || ||| || ||||| ||||| | ||| || || | || || Sbjct 26596 AAGAGGTCACGCACTCTGGAGGCACCGACACCGACAAAGAGCTCGACGAACTCTGACGCA 26655 Query 9486 GAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTA 9545 | || || ||| || || | || || || | ||| || ||||| ||||| ||| Sbjct 26656 GCGCAGGAGAAGAACGGCACCCCGGCCTCTCCGGCGACGGCACGCGCGAGGAGAGTTTTA 26715 Query 9546 CCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCC 9595 || || || ||| || |||||||| ||| ||| |||||||| || Sbjct 26716 CCTGTCCCAGGCGGGCCGACGAGGAGGCAGCCCTTTGGGATCTTGGCTCC 26765 Score = 84.2 bits (92), Expect = 3e-11 Identities = 149/218 (68%), Gaps = 12/218 (6%) Strand=Plus/Plus Query 9192 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9251 ||||| || | |||||||| || || || || || | |||| | || |||||| Sbjct 25496 CGATCGAACCTTCCTGGACGGAGAAGGGCAGAGTCCAGAACATCAGGCCTGTTTGTCGCG 25555 Query 9252 GCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9311 || | || | | ||| | | | | | || |||||||||||||||| | |||||| Sbjct 25556 GCAAGCACGATGACACCACTGTTACCAGCGAATCCATCCATCTCTGTCAGCAACTGGTTA 25615 Query 9312 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCA------GCACTGCGTTGCTTT 9365 || || || |||| ||||| || | ||||||| |||| || ||| | Sbjct 25616 ATGGTCTGCTCCCTCTCATCGTTTCC------ACCACCAAGCCCGGCACCACGCTGCCTC 25669 Query 9366 CCCACGGCATCAATCTCATCAATGAAGACAATACATGG 9403 || || |||||||||||||||||||||||||| || || Sbjct 25670 CCAACAGCATCAATCTCATCAATGAAGACAATGCAGGG 25707 >seq3634 Length=55208 Score = 123 bits (136), Expect = 3e-23 Identities = 116/148 (78%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 |||||| ||||| || ||||| || || || || |||||| ||||| |||||||| || Sbjct 548 GTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGGCC 607 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 |||||||| | ||| | || |||||||| || || ||||||||||| ||||| || || Sbjct 608 GCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTCGACGCA 667 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAG 117432 || || || | ||||||||||||||| Sbjct 668 GGCGAAGGCGACTAGGCGCTCGGCGAAG 695 >seq1443 Length=121453 Score = 123 bits (136), Expect = 3e-23 Identities = 116/148 (78%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 |||||| ||||| || ||||| || || || || |||||| ||||| |||||||| || Sbjct 25680 GTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGGCC 25739 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 |||||||| | ||| | || |||||||| || || ||||||||||| ||||| || || Sbjct 25740 GCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTCGACGCA 25799 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAG 117432 || || || | ||||||||||||||| Sbjct 25800 GGCGAAGGCGACTAGGCGCTCGGCGAAG 25827 >seq5229 Length=31845 Score = 114 bits (126), Expect = 2e-20 Identities = 217/320 (68%), Gaps = 12/320 (4%) Strand=Plus/Plus Query 9282 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9341 || |||||||||||||||| | |||||||| || || |||| ||||| || | Sbjct 26521 AATCCATCCATCTCTGTCAGCAACTGGTTAATGGTCTGCTCCCTCTCATCGTTTCC---- 26576 Query 9342 ATACCACCA------GCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACA 9395 ||||||| |||| || ||| | || || |||||||||||||||||||||||| Sbjct 26577 --ACCACCAAGCCCGGCACCACGCTGCCTCCCAACAGCATCAATCTCATCAATGAAGACA 26634 Query 9396 ATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACA 9455 || || || || | ||| | |||||||| || || || || ||| || ||| Sbjct 26635 ATGCAGGGCGCCTTGGCCTTGGCCTTCTCAAAGAGGTCACGCACTCTGGAGGCACCGACA 26694 Query 9456 CCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCA 9515 || ||||| | ||| || || | | |||| || || ||| || || | || Sbjct 26695 CCGACAAAGAGCTCGACGAACTCAGACGCGGCGCAGGAGAAGAACGGCACCCCGGCCTCT 26754 Query 9516 CCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCA 9575 || || | ||| || ||||| ||||| ||||| || || || || |||||||| Sbjct 26755 CCGGCGACGGCACGCGCGAGGAGAGTTTTACCTGTCCCAGGTGGGCCGACGAGGAGGCAG 26814 Query 9576 CCCCGTGGAATCTTGGCGCC 9595 ||| ||| |||||||| || Sbjct 26815 CCCTTTGGGATCTTGGCTCC 26834 >seq1932 Length=101031 Score = 95.1 bits (104), Expect = 1e-14 Identities = 304/464 (66%), Gaps = 11/464 (2%) Strand=Plus/Minus Query 9179 TACTTGGATCTTACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAAC 9238 ||||| |||| ||||||||| | ||||| | ||| | || | ||| ||||| ||| Sbjct 76158 TACTT--ATCTGACGATCAAATCTTCCTGGTCTAAGCAAAGCCTTATCTAGGATGTCAGG 76101 Query 9239 GCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGT 9298 | || || | || | ||||||| || | | | |||| |||||||||||| Sbjct 76100 TCTGTTGGTACCAGCAAGAACAACAACTCCAGATGTTGTTCCAAATCCATCCATCTCTAC 76041 Query 9299 CAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATT--CGCTGGCATACCACCAGCACTG 9356 || | ||||| | || ||| || ||||||| | | | | | | || ||| | Sbjct 76040 CAGCAACTGGTTCAATGTGCTTTCACGCTCATCATGTCCACCAGAAAATCCCC--CACGG 75983 Query 9357 CG--TTGCTTTCCCACG-GCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCG 9413 | |||| ||| |||||||||||||||||||||||||||| ||| | || Sbjct 75982 CCCCTTGCACGACCAATAGCATCAATCTCATCAATGAAGACAATACTAGGTGCACATTGT 75923 Query 9414 CGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACA 9473 || || || ||| | || ||||| | || |||||||| |||||||||| Sbjct 75922 CGAGCTTCTTGAAATAAGCTTCGCACCCTGGATGGTCCAACACCAACGAACATCTCCATG 75863 Query 9474 AAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGC 9532 |||| || | ||| || | | |||||| |||| ||| || || || | ||| ||| Sbjct 75862 AAGTCTGAACCAGAA-ATAGACAAGAAGGGCACATCAGACTCTCCTGCGGTAGCTTTGGC 75804 Query 9533 GAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGC 9592 ||| || || || ||||| || || ||| | || || |||||| ||| || || || Sbjct 75803 GAGGAGCGTTTTTCCCGTGCCAGGGGGACCAACAAGAAGAGCACCCTTTGGTATTTTAGC 75744 Query 9593 GCCACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCACAA 9636 ||| | | ||| ||| || | || ||||||| ||||| Sbjct 75743 TCCAAGTTCTTCATATTTCTTGGGATTTTTCAGAAAATGCACAA 75700 >seq837 Length=163444 Score = 82.4 bits (90), Expect = 9e-11 Identities = 101/137 (74%), Gaps = 1/137 (1%) Strand=Plus/Plus Query 106463 GCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCT 106522 || |||||||| | |||||| || || |||||| | ||| ||||| | || || Sbjct 143507 GCAATTGATGCTAGATTGCACACGGCAGTCTCAGTAGGACTTGTATACTCAATTATCTCA 143566 Query 106523 GTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCAC 106582 |||||||||||||| |||||| || || | ||| | ||||||||| || ||||||| Sbjct 143567 GTACACAAGTTGGACGACTTAATTGTGCCAAGATTTTGTTGGTTACTTTTCCTGTTGCAA 143626 Query 106583 GCATCCTTGTAGAGCAT 106599 | |||| || ||| ||| Sbjct 143627 GTATCC-TGCAGACCAT 143642 >seq737 Length=174138 Score = 82.4 bits (90), Expect = 9e-11 Identities = 101/137 (74%), Gaps = 1/137 (1%) Strand=Plus/Minus Query 106463 GCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCT 106522 || |||||||| | |||||| ||||| |||||| | ||| ||||| | || || Sbjct 55224 GCAATTGATGCTAGATTGCACACAGCAGTCTCAGTGGGACTTGTATACTCAATTATCTCA 55165 Query 106523 GTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCAC 106582 |||||||||||||| ||| || || || | ||| | ||||||||| || ||||||| Sbjct 55164 GTACACAAGTTGGACGACTTTATTGTGCCAAGATTTTGTTGGTTACTTTTCCTGTTGCAA 55105 Query 106583 GCATCCTTGTAGAGCAT 106599 | |||| || ||| ||| Sbjct 55104 GTATCC-TGCAGATCAT 55089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589878416206920