Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= NC_015279.1 Length=190789 Score E Sequences producing significant alignments: (Bits) Value seq5025 138 1e-27 seq6788 116 5e-21 seq1910 105 8e-18 seq4399 98.7 1e-15 seq2985 86.0 8e-12 >seq5025 Length=34140 Score = 138 bits (152), Expect = 1e-27 Identities = 234/339 (69%), Gaps = 0/339 (0%) Strand=Plus/Minus Query 181424 TTTGACATCCTTGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGA 181483 ||||| || | || |||||| | | | ||||| || || ||||| || ||||| | Sbjct 14228 TTTGATATTATGGACGACTGGTTACGAAGGGACCGTTTCGTTTTTGTAGGATGGTCCAGC 14169 Query 181484 CTACTTCTTTTTCCCACTGCTTATCTTGCAATTGGGGGCTGGCTCACTGGCACTACTTTT 181543 ||| | || ||||| ||||||| | || | ||||| ||| | || || ||||||||| Sbjct 14168 CTATTGCTCTTTCCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACTACTTTT 14109 Query 181544 GTTACGTCGTGGTACACCCACGGATTGGCGTCTTCCTACCTTGAGGGTGCTAATTTCCTT 181603 || || || ||||| ||||| ||||| || |||||| | || ||| |||||| | Sbjct 14108 GTAACTTCTTGGTATACCCATGGATTAGCTAGTTCCTATTTGGAAGGTTGCAATTTCTTA 14049 Query 181604 ACAGCGGCTGTGTCAACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGT 181663 || || || || || || ||||| | | | | || ||| | | ||||| ||||| Sbjct 14048 ACGGCAGCGGTTTCCACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGA 13989 Query 181664 CCTGAAGCTCAGGGCGATTTCGTCCGCTGGGTCCAACTTGGGGGACTCTGGGCTTTTGTG 181723 || ||||| || || ||||| || ||| ||| | || || || ||| ||||||| Sbjct 13988 CCGGAAGCACAAGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTT 13929 Query 181724 GCGCTCCACGGAGCCTTCGCTCTTATCGGTTTTATGCTC 181762 || || || || || || || || || ||||| ||| || Sbjct 13928 GCTCTACATGGGGCTTTTGCACTAATAGGTTTCATGTTC 13890 >seq6788 Length=15930 Score = 116 bits (128), Expect = 5e-21 Identities = 147/202 (73%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 179738 GTGGGATAACTTCTGCGAGTGGGTAACCTCTACCAATAACCGCCTCTATGTCGGTTGGTT 179797 ||||| | ||||||| | ||| |||| ||| | || || || || |||| ||||| Sbjct 6676 GTGGGGTCGCTTCTGCAACTGGATAACTAGCACCGAAAATCGTCTTTACATCGGATGGTT 6617 Query 179798 CGGCGTTCTGATGATTCCAACTCTGTTGGCAGCAACTATCTGCTTCATCGTCGCCTTCAT 179857 || ||| ||||||| || || | ||| | |||||| | || || |||||||||| Sbjct 6616 TGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCCGTATTTATTATCGCCTTCAT 6557 Query 179858 CGCTGCTCCCCCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTA 179917 ||||||||| || || || || ||||| || ||||| || || ||||||| | | || Sbjct 6556 CGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTA 6497 Query 179918 TGGTAACAACATCATCTCTGGT 179939 ||| ||||| || ||||||||| Sbjct 6496 TGGAAACAATATTATCTCTGGT 6475 >seq1910 Length=102200 Score = 105 bits (116), Expect = 8e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 181424 TTTGACATCCTTGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGA 181483 ||||| || | || |||||| | | | ||||| || || ||||| || ||||| || Sbjct 8341 TTTGATATTATGGACGACTGGTTACGAAGGGACCGTTTCGTTTTTGTAGGATGGTCCGGC 8400 Query 181484 CTACTTCTTTTTCCCACTGCTTATCTTGCAATTGGGGGCTGGCTCACTGGCACTACTTTT 181543 ||| | || ||||| ||||||| | || | ||||| ||| | || || ||||||||| Sbjct 8401 CTATTACTCTTTCCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACTACTTTT 8460 Query 181544 GTTACGTCGTGGTACACCCACGGATTGGCGTCTTCCTACCTTGAGGGTGCTAATTTCCTT 181603 || || || ||||| ||||| ||||| || |||||| | || ||| |||||| | Sbjct 8461 GTAACTTCTTGGTATACCCATGGATTAGCTAGTTCCTATTTGGAAGGTTGCAATTTCTTA 8520 Query 181604 ACAGCGGCTGTGTCAACGCCTGC 181626 || || || || || || ||||| Sbjct 8521 ACGGCAGCGGTTTCCACCCCTGC 8543 >seq4399 Length=42927 Score = 98.7 bits (108), Expect = 1e-15 Identities = 80/97 (82%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 182112 ATTCAATGGTTACAGCGAACCGCTTCTGGTCTCAGATCTTCGGTATTGCGTTTAGCAATA 182171 ||||||||||||| || |||||||| ||||| || ||||| ||| |||| ||| ||||| Sbjct 11125 ATTCAATGGTTACTGCTAACCGCTTTTGGTCCCAAATCTTTGGTGTTGCTTTTTCCAATA 11184 Query 182172 AGAGGTGGTTGCATTTCTTTATGCTCTTTGTTCCTGT 182208 | | ||||| |||||||||||||| ||||| || || Sbjct 11185 AACGTTGGTTACATTTCTTTATGCTATTTGTACCCGT 11221 >seq2985 Length=69808 Score = 86.0 bits (94), Expect = 8e-12 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 171909 CTGGACGCTGCAGATGAAGCGGGGGTTGATGCTCCATATTCCTGCCGTGCCGGTGCCTGT 171968 || |||||||| || || || || || || ||||| || ||||| || || || || Sbjct 54255 CTCGACGCTGCTGAGGATGCTGGTGTGGAGTTGCCATACTCATGCCGCGCTGGGGCTTGC 54314 Query 171969 TCCAGCTGTGCTGGTAAACTTGAGAGTGGTACGGTAGATCAGTCAGAGCAATCTTTCCTT 172028 |||| ||| ||||| ||| ||||| ||| |||||||||||| || ||| |||||| Sbjct 54315 TCCACCTGCGCTGGCAAAATTGAGGCTGGCGAGGTAGATCAGTCGGATGGATCCTTCCTT 54374 Query 172029 GATGATG 172035 ||||||| Sbjct 54375 GATGATG 54381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610290873265320