Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq5025 170 2e-37 seq1910 125 8e-24 >seq5025 Length=34140 Score = 170 bits (188), Expect = 2e-37 Identities = 245/344 (71%), Gaps = 10/344 (3%) Strand=Plus/Minus Query 170529 TTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTTGTATTCATAGGATGGTCTGGT 170588 |||||| || | |||||||||||| || || ||||| || || |||||||||| | Sbjct 14228 TTTGATATTATGGACGACTGGTTACGAAGGGACCGTTTCGTTTTTGTAGGATGGTCCAGC 14169 Query 170589 CTTTTACTTCTGCCTTGTGCATACCTATCAATCGGTGGTTGGTTCTTAGGGACTACCTTC 170648 || || || | |||||||| || | | | || |||||||| ||||||||| || Sbjct 14168 CTATTGCTCTTTCCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACTACTTTT 14109 Query 170649 GTTACATCATGGTATACACATGGTGTTGCTTCCTCATATCTTGAGGGATGTAACTTCCTA 170708 || || || |||||||| ||||| | ||| || ||| | || || || || ||| || Sbjct 14108 GTAACTTCTTGGTATACCCATGGATTAGCTAGTTCCTATTTGGAAGGTTGCAATTTCTTA 14049 Query 170709 ACAGCAGCAGTTTCCACACCTGGCGACGCAATGGGT---CATAGTCTT--CTGTTCCTTT 170763 || ||||| |||||||| |||| |||| | | || | |||| || | || | Sbjct 14048 ACGGCAGCGGTTTCCACCCCTG-----CCAATAGTTTAGCACACTCTTTGTTGCTACTAT 13994 Query 170764 GGGGACCTGAAGCACAAGGTTCATTTGTTCGTTGGTTACAACTCGGAGGTTTATGGAACT 170823 ||||||| ||||||||||| ||| |||||||| ||| | || ||| | |||| | Sbjct 13993 GGGGACCGGAAGCACAAGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTT 13934 Query 170824 TTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTC 170867 |||| || ||||||| | |||| ||| |||||||||||| || Sbjct 13933 TTGTTGCTCTACATGGGGCTTTTGCACTAATAGGTTTCATGTTC 13890 >seq1910 Length=102200 Score = 125 bits (138), Expect = 8e-24 Identities = 149/202 (74%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 170529 TTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTTGTATTCATAGGATGGTCTGGT 170588 |||||| || | |||||||||||| || || ||||| || || |||||||||| || Sbjct 8341 TTTGATATTATGGACGACTGGTTACGAAGGGACCGTTTCGTTTTTGTAGGATGGTCCGGC 8400 Query 170589 CTTTTACTTCTGCCTTGTGCATACCTATCAATCGGTGGTTGGTTCTTAGGGACTACCTTC 170648 || ||||| | |||||||| || | | | || |||||||| ||||||||| || Sbjct 8401 CTATTACTCTTTCCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACTACTTTT 8460 Query 170649 GTTACATCATGGTATACACATGGTGTTGCTTCCTCATATCTTGAGGGATGTAACTTCCTA 170708 || || || |||||||| ||||| | ||| || ||| | || || || || ||| || Sbjct 8461 GTAACTTCTTGGTATACCCATGGATTAGCTAGTTCCTATTTGGAAGGTTGCAATTTCTTA 8520 Query 170709 ACAGCAGCAGTTTCCACACCTG 170730 || ||||| |||||||| |||| Sbjct 8521 ACGGCAGCGGTTTCCACCCCTG 8542 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579112284858720