Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= NC_015281.1 Length=179563 Score E Sequences producing significant alignments: (Bits) Value seq5025 140 4e-28 >seq5025 Length=34140 Score = 140 bits (154), Expect = 4e-28 Identities = 235/339 (69%), Gaps = 6/339 (2%) Strand=Plus/Minus Query 169307 TTCGATGTTCTCGATGACTGGCTCAAACGCGACCGCTTTGTATTCATTGGTTGGTCTGGT 169366 || ||| || | || |||||| | | | ||||| || || || | || ||||| | Sbjct 14228 TTTGATATTATGGACGACTGGTTACGAAGGGACCGTTTCGTTTTTGTAGGATGGTCCAGC 14169 Query 169367 CTACTTCTTCTTCCCACTGCCTATCTTGCTATTGGAGGGTGGCTCACTGGTACAGCGTTT 169426 ||| | || |||| ||| ||| | ||| | || || ||| | || || || | ||| Sbjct 14168 CTATTGCTCTTTCCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACTACTTTT 14109 Query 169427 GTTACTTCCTGGTACACCCACGGACTCGCTTCCAGTTACT---TAGAAGGCGCTAACTTC 169483 || ||||| ||||| ||||| ||| | ||| |||| || | ||||| || ||| Sbjct 14108 GTAACTTCTTGGTATACCCATGGATTAGCT---AGTTCCTATTTGGAAGGTTGCAATTTC 14052 Query 169484 CTCACTGCTGCTGTCAGTACACCTGCTGACGCTATGGGACACTCACTGCTCTTGCTATGG 169543 | || || || || || ||||| | | | | |||||| || | | |||||| Sbjct 14051 TTAACGGCAGCGGTTTCCACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGG 13992 Query 169544 GGTCCAGAAGCACAAGGCGATTTCGTTCGCTGGTGTCAATTGGGTGGTCTCTGGAACTTT 169603 || || ||||||||||| ||||| ||| ||||||||||| |||||||| |||| ||| Sbjct 13991 GGACCGGAAGCACAAGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTT 13932 Query 169604 GTAGCACTTCATGGTGCATTTGCATTGATTGGTTTCATG 169642 || || || ||||| || |||||| | || ||||||||| Sbjct 13931 GTTGCTCTACATGGGGCTTTTGCACTAATAGGTTTCATG 13893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 574373907287640