Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= NC_015286.1 Length=175230 Score E Sequences producing significant alignments: (Bits) Value seq5025 181 1e-40 seq6788 127 2e-24 seq1910 111 2e-19 seq4399 95.1 1e-14 >seq5025 Length=34140 Score = 181 bits (200), Expect = 1e-40 Identities = 238/326 (73%), Gaps = 4/326 (1%) Strand=Plus/Minus Query 168495 GATGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTTTT 168554 || |||||| | | |||| |||||||||||||| || ||||| | || | || ||| Sbjct 14216 GACGACTGGTTACGAAGGGACCGTTTCGTTTTTGTAGGATGGTCCAGCCTATTGCTCTTT 14157 Query 168555 CCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTGCTTTCGTCACGAGTTGG 168614 || ||||||| | ||| | || |||||| |||| |||||| |||| || || |||| Sbjct 14156 CCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACTACTTTTGTAACTTCTTGG 14097 Query 168615 TATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGC-GCAAACTTTCTTA-CTGCGGCAG 168672 ||||| || || || || ||||||||| |||| || |||| ||||||| | || || | Sbjct 14096 TATACCCATGGATTAGCTAGTTCCTATTTGGAAGGTTGCAA--TTTCTTAACGGCAGCGG 14039 Query 168673 TTAGTACTCCAGCAGATTCTATGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCAC 168732 || || || || || | | | || ||| | |||| || ||||| || || |||| Sbjct 14038 TTTCCACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGACCGGAAGCAC 13979 Query 168733 AAGGGGATTTCGTCAGATGGTGTCAACTTGGAGGACTCTGGGCTTTTGTGGCGCTCCACG 168792 |||||||||| | ||||||||| | || || || ||| ||||||| || || || | Sbjct 13978 AAGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTTGCTCTACATG 13919 Query 168793 GGGCTTTCGCTCTAATCGGTTTCATG 168818 ||||||| || ||||| ||||||||| Sbjct 13918 GGGCTTTTGCACTAATAGGTTTCATG 13893 >seq6788 Length=15930 Score = 127 bits (140), Expect = 2e-24 Identities = 146/194 (75%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 167087 CTTTTGCGATTGGGTTACCAGCACTAACAACCGTCTGTATGTCGGTTGGTTCGGCGTTCT 167146 ||| ||| | ||| | || ||||| | || ||||| || |||| ||||| || ||| | Sbjct 6667 CTTCTGCAACTGGATAACTAGCACCGAAAATCGTCTTTACATCGGATGGTTTGGTGTTTT 6608 Query 167147 GATGATCCCTACGTTGCTTGCAGCAACCATCTGT-TTCATCATCGCCTTCGTCGGTGCTC 167205 |||||||||||| || | | |||| | || || || || ||||||||| ||| ||||| Sbjct 6607 GATGATCCCTACCTTATTGACCGCAA-CTTCCGTATTTATTATCGCCTTCATCGCTGCTC 6549 Query 167206 CTCCTGTGGACATCGATGGTATCCGCGAACCAGTTGCTGGTTCACTCATGTATGGTAACA 167265 |||| || || || |||||||| || || || ||| ||||||| | | ||||| |||| Sbjct 6548 CTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACA 6489 Query 167266 ACATCATCTCTGGT 167279 | || ||||||||| Sbjct 6488 ATATTATCTCTGGT 6475 >seq1910 Length=102200 Score = 111 bits (122), Expect = 2e-19 Identities = 128/170 (75%), Gaps = 3/170 (2%) Strand=Plus/Plus Query 168495 GATGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTTTT 168554 || |||||| | | |||| |||||||||||||| || ||||| || || | || ||| Sbjct 8353 GACGACTGGTTACGAAGGGACCGTTTCGTTTTTGTAGGATGGTCCGGCCTATTACTCTTT 8412 Query 168555 CCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTGCTTTCGTCACGAGTTGG 168614 || ||||||| | ||| | || |||||| |||| |||||| |||| || || |||| Sbjct 8413 CCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACTACTTTTGTAACTTCTTGG 8472 Query 168615 TATACTCACGGGTTGGCAAGTTCCTATCTGG-AGGGCGCAAACTTTCTTA 168663 ||||| || || || || ||||||||| ||| ||| |||| ||||||| Sbjct 8473 TATACCCATGGATTAGCTAGTTCCTATTTGGAAGGTTGCAA--TTTCTTA 8520 >seq4399 Length=42927 Score = 95.1 bits (104), Expect = 1e-14 Identities = 79/97 (81%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 169171 ATTCAATGGTTACTGCAAACCGTTTCTGGTCTCAGATCTTTGGTATTGCGTTCAGTAATA 169230 |||||||||||||||| ||||| || ||||| || ||||||||| |||| || |||| Sbjct 11125 ATTCAATGGTTACTGCTAACCGCTTTTGGTCCCAAATCTTTGGTGTTGCTTTTTCCAATA 11184 Query 169231 AGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGT 169267 | | ||||| |||||||||||||| ||||| || || Sbjct 11185 AACGTTGGTTACATTTCTTTATGCTATTTGTACCCGT 11221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560510713489200