Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= NC_015287.1 Length=232878 Score E Sequences producing significant alignments: (Bits) Value seq6788 98.7 1e-15 seq4399 89.7 8e-13 >seq6788 Length=15930 Score = 98.7 bits (108), Expect = 1e-15 Identities = 127/174 (73%), Gaps = 6/174 (3%) Strand=Plus/Minus Query 215315 ACTGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTCATGATTCCTTGCCTCCT---C 215371 || || |||||| | ||| | || ||||||||||| | ||||| ||| | | | | Sbjct 6645 ACCGAAAATCGTCTTTACATCGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACC 6586 Query 215372 GCAGCTACCACTTGTTTCATCGTAGCATTCATCGCTGCACCTCCTGTCGATATCGACGGA 215431 ||| || || | | | |||| | ||||||||||| ||||| || ||||| || || Sbjct 6585 GCAACTTCCGTATTTATTATCG---CCTTCATCGCTGCTCCTCCAGTAGATATTGATGGT 6529 Query 215432 ATCAGAGAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGT 215485 || | ||||| ||| ||||||||||| | ||||| ||||| || ||||||||| Sbjct 6528 ATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGT 6475 >seq4399 Length=42927 Score = 89.7 bits (98), Expect = 8e-13 Identities = 109/150 (73%), Gaps = 9/150 (6%) Strand=Plus/Minus Query 215396 GCATTCATCGCTGCACCTCCTGTCGATATCGACGGAATCAGAGAGCCAGTTGCTGGTTCT 215455 || ||||||||||| |||| || ||||| | ||||| ||| ||||||| Sbjct 12186 GCCTTCATCGCTGCTCCTCAAGTAGATATTT---------GTGAGCCTGTTTCTGGTTCG 12136 Query 215456 TTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTACCTAGTTCAAACGCAATCGGA 215515 ||| | | ||| ||||| || |||||||||| ||| | |||| ||| || |||||| Sbjct 12135 TTACTATGTGGAAACAATATTATCTCTGGTGTCGTTATTCCTACTTCTGCGGCGATCGGA 12076 Query 215516 TTACACTTCTACCCTATCTGGGAAGCAGCA 215545 ||||| || ||||| || |||||||| ||| Sbjct 12075 TTACATTTTTACCCAATATGGGAAGCTGCA 12046 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 744952300401840